DR403367

Overview
NameDR403367
Unique NameDR403367
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1408 contig Csv1_Contig1408:3..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403367 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.175e-30
Identity = 62/163 (38.04%), Postives = 97/163 (59.51%), Query Frame = 1
Query:  256 EKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 744
            E+ +H  +  G  AD+ +W+N++    +LG  T +W LFE   Y     V +  +LS+ +LFLW+ ++   N+  P++P + + E+FV   A A+R  IN  LAV REI  GR+ K+   V   LW +S VGN+ NF+T+ Y+  VL   +P +YE+Y+D ID
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLID 164          
BLAST of DR403367 vs. ExPASy Swiss-Prot
Match: RTNLN_ARATH (Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 3.015e-28
Identity = 64/168 (38.10%), Postives = 102/168 (60.71%), Query Frame = 1
Query:  253 REKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWS--NASTFINKSPPEIPVVTLPE---KFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKI 741
            R + ++H LG G+ ADI  W+NKK S  +LG  T +W LFE++EY  IT +C I +L + +  +WS   +S  I   PP I  + + E   +F+         +IN  +  L +I+SG+D +     +  LW+LS+VGN+ + +TL YIVFV L T+P++YE+YE+++
Sbjct:   18 RRRSLYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLIWSYIGSSQLIQSKPPSINDLRISESNWRFLFN-------KINWFIIKLYDISSGKDFRLLFLAVVSLWILSVVGNYFSSLTLLYIVFVGLETIPMLYEQYEEEL 178          
BLAST of DR403367 vs. ExPASy Swiss-Prot
Match: RTNLK_ARATH (Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.146e-27
Identity = 61/160 (38.12%), Postives = 97/160 (60.62%), Query Frame = 1
Query:  265 IHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 744
            +H  LGAG  AD+ LWRN+  +  +L  +T  W LFE   Y+L++ V ++ +L +A+ FLW+ ++T +N+  P +P + +PE+F  + A  LR  IN  L++  +I   R+  + L V   LW +S VG   N +TL YI  +L  + P++YEKY+D ID
Sbjct:   13 VHQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISYVGTLINSLTLVYIGVLLSLSFPIVYEKYQDHID 172          
BLAST of DR403367 vs. ExPASy Swiss-Prot
Match: RTNLP_ARATH (Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.425e-27
Identity = 55/172 (31.98%), Postives = 98/172 (56.98%), Query Frame = 1
Query:  229 SKVFRLFGREKPIHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKID 744
            S  +RL GR+  +H  +G GK AD+ LWR + +S GV+  +T  W++FE      +++   + ++ + + F+ +  S F N+    +P + L E+ V   A++ R ++N  L +  ++  G D + F  V+  LWLLS +G++ +  TL YI  +L  T+P +Y KY+ K+D
Sbjct:   20 SSDYRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPALYSKYQSKVD 191          
BLAST of DR403367 vs. ExPASy Swiss-Prot
Match: RTNLO_ARATH (Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.558e-19
Identity = 55/163 (33.74%), Postives = 89/163 (54.60%), Query Frame = 1
Query:  265 IHHVLGAGKPADIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSN-ASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKIDSF 750
            +  +LG G  AD+ LW++K  S   L  AT  W L E +E  L+ L+C I +L + +LFLW+     F  + PP    +  P+  +     AL   +   L +L EIA G+D K FL  I  + ++  +G++ + +T+ YI  V   T+PV+Y ++++ IDSF
Sbjct:    4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFLWAKFGEVFFTRRPPTPEELNQPDSPL----KALFSMMEGHLLMLYEIAYGKDNKTFLKTILYVAIIYNIGSYISLLTILYICLVCSMTIPVVYMQFQELIDSF 162          
BLAST of DR403367 vs. ExPASy Swiss-Prot
Match: RTNLM_ARATH (Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.833e-17
Identity = 45/148 (30.41%), Postives = 82/148 (55.41%), Query Frame = 1
Query:  298 DIFLWRNKKISAGVLGGATAMWVLFELLEYHLITLVCHISILSLAVLFLWSNASTFINKSPPEIPVVTLPEKFVLEFASALRYEINRALAVLREIASGRDLKKFLGVIAGLWLLSIVGNWCNFVTLFYIVFVLLHTVPVIYEKYEDKI 741
            DI+LWR KK++   L  +T+ W+L     +  IT+V  I I  ++++FLW +    ++K  PE+  + + E+FV+E   + R  +   +  +  + +  +   F   + G W+LS +GN  +F T  +I  V+  TVP ++E+Y D+I
Sbjct:   18 DIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLVMGLTVPKLWEEYGDQI 165          
The following BLAST results are available for this feature:
BLAST of DR403367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RTNLJ_ARATH7.175e-3038.04Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]
RTNLN_ARATH3.015e-2838.10Reticulon-like protein B14 OS=Arabidopsis thaliana... [more]
RTNLK_ARATH1.146e-2738.13Reticulon-like protein B11 OS=Arabidopsis thaliana... [more]
RTNLP_ARATH7.425e-2731.98Reticulon-like protein B16 OS=Arabidopsis thaliana... [more]
RTNLO_ARATH2.558e-1933.74Reticulon-like protein B15 OS=Arabidopsis thaliana... [more]
RTNLM_ARATH1.833e-1730.41Reticulon-like protein B13 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244M05 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244M05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403367 ID=DR403367; Name=DR403367; organism=Citrus sinensis; type=EST; length=760bp
GGGGGTTCCCACCGAGTCTCGCTCTCTCTCGTTCTAGAGTCTAGTACATT
TTTCAATTCATTTTCATCGGCGCTTACTCGGCGGCAGAGATCTATGGCGG
AACATGCACCTGAGCACGAATCAGCCGACAAATCACTGGTGGAGAAGATC
ACGGATAAGATCCATGGCCACGACTCCTCGTCATCTGACTCCGATGACGA
CAAGCCGTCGTCTATTGACGCCTTTAAGTCCAAAGTATTCAGGCTCTTCG
GAAGAGAAAAACCTATTCACCATGTCCTCGGAGCTGGAAAACCTGCTGAT
ATTTTCCTATGGAGGAACAAGAAAATCTCTGCTGGTGTGCTAGGTGGAGC
CACTGCAATGTGGGTTCTCTTTGAGTTGCTGGAATACCATTTAATCACTT
TGGTCTGCCATATATCGATTCTCTCTCTGGCTGTTCTCTTCCTGTGGTCC
AATGCATCCACATTTATCAACAAATCACCGCCAGAGATTCCAGTTGTTAC
ACTTCCTGAGAAGTTTGTCCTTGAATTCGCCTCTGCCTTGAGGTATGAAA
TCAACCGAGCCTTGGCTGTCCTGCGGGAAATTGCGTCTGGAAGGGACTTG
AAGAAGTTTCTTGGTGTCATTGCTGGCTTGTGGCTTTTGTCTATTGTCGG
TAATTGGTGCAACTTCGTGACATTATTCTACATTGTATTTGTTTTGCTAC
ACACCGTGCCCGTGATTTATGAGAAGTACGAGGACAAGATTGATTCATTT
GGTGAGAAGG
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