DR403294

Overview
NameDR403294
Unique NameDR403294
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length700
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6928 contig Csv1_Contig6928:11..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403294 vs. ExPASy Swiss-Prot
Match: ASP6_CAEEL (Aspartic protease 6 OS=Caenorhabditis elegans GN=asp-6 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.805e-14
Identity = 49/130 (37.69%), Postives = 63/130 (48.46%), Query Frame = 2
Query:  317 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVG-----DLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEIS 691
            +N+F D +Y G ++IGTP Q F V+ DTGSSNLW+P   C                     +NG S  IQYG+G  +G   QD V+ G      L V    F  A+K  S  F     DGILGL F  ++
Sbjct:   63 VNDFGDFEYLGNITIGTPDQGFIVVLDTGSSNLWIPGPTC--KTNCKTKSKFDSTASSTFVKNGKSWTIQYGSGDAAGILGQDTVRFGAKGDSQLSVPTTTFGIASK-ISADFKNDATDGILGLAFTSLA 189          
BLAST of DR403294 vs. ExPASy Swiss-Prot
Match: CARP3_RHINI (Rhizopuspepsin-3 OS=Rhizopus niveus PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.162e-14
Identity = 49/152 (32.24%), Postives = 78/152 (51.32%), Query Frame = 2
Query:  260 VRRYNLHGSLGDSDTD-------IVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEIS 691
            + +Y+ H S+  S++        +   + + D +Y+GEV++GTP  T  + FDTGSS+LW  S+ C  +                  R+G + +I YG G + SG    D V +G L +++Q    A +EAS  F +   DG+LGLGF  I+
Sbjct:   50 IAKYHRHRSVSSSNSTSTDGIGYVPVTDYYNDIEYYGEVTVGTPGVTLKLDFDTGSSDLWFASSLC--TNCGSSQTKYNPNESSTYARDGRTWSISYGDGSSASGILGTDTVILGGLTIRHQTIELARREAS-QFQSGPSDGLLGLGFDSIT 198          
BLAST of DR403294 vs. ExPASy Swiss-Prot
Match: CARP4_RHINI (Rhizopuspepsin-4 OS=Rhizopus niveus PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.392e-13
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 2
Query:  281 GSLG-DSDTDIVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEIS 691
            GS G +S   +   ++  D +Y+GEV++GTP     + FDTGSS+LW  S  C  +                  ++G + +I YG G + SG   +D V +G L +KNQ  IE  K  + +F +   DG+LGLGF  I+
Sbjct:   69 GSAGTESSGSVPVTDDGNDIEYYGEVTVGTPGIKLKLDFDTGSSDLWFASTLC--TNCGSSQTKYDPSQSSTYAKDGRTWSISYGDGSSASGILGKDTVNLGGLKIKNQ-IIELAKREASSFSSGPSDGLLGLGFDSIT 204          
BLAST of DR403294 vs. ExPASy Swiss-Prot
Match: PAG1_BOVIN (Pregnancy-associated glycoprotein 1 OS=Bos taurus GN=PAG1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.375e-13
Identity = 46/125 (36.80%), Postives = 61/125 (48.80%), Query Frame = 2
Query:  317 LNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTGAISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEIS 691
            L N  D  Y G ++IGTP Q F V+FDT SS+LWVPS  C                      N T   I YG+G + G    D V++G+LV  +Q F  + +E    F    +DG+LGL +  IS
Sbjct:   63 LRNIKDLVYMGNITIGTPPQEFQVVFDTASSDLWVPSDFCTSPACSTHVRFRHLQSSTFRLTNKT-FRITYGSGRMKGVVVHDTVRIGNLVSTDQPFGLSIEEYG--FEGRIYDGVLGLNYPNIS 184          
BLAST of DR403294 vs. ExPASy Swiss-Prot
Match: CARP_SYNRA (Syncephapepsin OS=Syncephalastrum racemosum GN=SPSR PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 47/121 (38.84%), Postives = 64/121 (52.89%), Query Frame = 2
Query:  332 DAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEIS 691
            D +Y+  VS+GTP+Q+  + FDTGSS+LW  S  C                     + G S  I YG G + SG  + DNV++G L +  Q    AT+E+S +F +   DGILGLGF  IS
Sbjct:   86 DVEYYATVSVGTPAQSIKLDFDTGSSDLWFSSTLC----TSCGSKSFDPTKSSTYKKVGKSWQISYGDGSSASGITATDNVELGGLKITGQTIELATRESS-SFSSGAIDGILGLGFDTIS 201          
BLAST of DR403294 vs. ExPASy Swiss-Prot
Match: CARP1_RHINI (Rhizopuspepsin-1 OS=Rhizopus niveus GN=RNAP PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 45/121 (37.19%), Postives = 62/121 (51.24%), Query Frame = 2
Query:  332 DAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEIS 691
            D +Y+GEV++GTP     + FDTGSS++W  S  C  S                   +G + +I YG G + SG  + DNV +G L++K Q  IE  K  S  F     DG+LGLGF  I+
Sbjct:   79 DVEYYGEVTVGTPGIKLKLDFDTGSSDMWFASTLC--SSCSNSHTKYDPKKSSTYAADGRTWSISYGDGSSASGILATDNVNLGGLLIKKQT-IELAKRESSAFATDVIDGLLGLGFNTIT 196          
BLAST of DR403294 vs. ExPASy Swiss-Prot
Match: CARP5_RHINI (Rhizopuspepsin-5 OS=Rhizopus niveus PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.910e-13
Identity = 57/191 (29.84%), Postives = 85/191 (44.50%), Query Frame = 2
Query:  146 ALPNDGLVRIGLRKKKLGQINRLVGQTVSKEEETTRTPVRRYNLHGSLGDSDTD--------IVALNNFMDAQYFGEVSIGTPSQTFTVIFDTGSSNLWVPSAKCYFSVXXXXXXXXXXXXXXXXXRNGTSAAIQYGTG-AISGFFSQDNVKVGDLVVKNQDFIEATKEASITFLAAKFDGILGLGFQEIS 691
            A PN   V I L K K  + N          +   +  + +Y+ H S   S           +   + + D +YFG+V +GTP  T  + FDTGSS+LW  S+ C  +                  ++G + +I YG G + SG    D V +G L ++ Q    A +EAS +F     DG+LGLGF  I+
Sbjct:   21 AAPNGKKVNIPLTKNKDYKPNA---------KNAIQKVLAKYHRHRSTSSSSNSTSTDGIGRVPVTDYYNDIEYFGQVKVGTPGVTLKLDFDTGSSDLWFASSLC--TNCGYSQTKYNPNQSRTYAKDGRAWSISYGDGSSASGILGTDTVVLGGLTIQRQTIELARREAS-SFQNGPSDGLLGLGFNSIT 199          
The following BLAST results are available for this feature:
BLAST of DR403294 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
ASP6_CAEEL2.805e-1437.69Aspartic protease 6 OS=Caenorhabditis elegans GN=a... [more]
CARP3_RHINI8.162e-1432.24Rhizopuspepsin-3 OS=Rhizopus niveus PE=3 SV=1[more]
CARP4_RHINI1.392e-1334.53Rhizopuspepsin-4 OS=Rhizopus niveus PE=3 SV=1[more]
PAG1_BOVIN2.375e-1336.80Pregnancy-associated glycoprotein 1 OS=Bos taurus ... [more]
CARP_SYNRA3.102e-1338.84Syncephapepsin OS=Syncephalastrum racemosum GN=SPS... [more]
CARP1_RHINI3.102e-1337.19Rhizopuspepsin-1 OS=Rhizopus niveus GN=RNAP PE=1 S... [more]
CARP5_RHINI6.910e-1329.84Rhizopuspepsin-5 OS=Rhizopus niveus PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244H22 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244H22 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403294 ID=DR403294; Name=DR403294; organism=Citrus sinensis; type=EST; length=700bp
GGGGTCGATTTCTCGGTCTCGTCAGTCCACTTCTTTACTCTGTCTGTGCT
CTTTTGAAAGATACTCAGTTGTCGACATGGGAACCAAATTCACAGCCATT
CGGGCTGCACTTTTTCTTTTTCTCATTTTGTCCCCTGCGGCCTTTGCTTT
GCCAAATGATGGATTGGTAAGAATTGGGCTGAGAAAGAAGAAATTGGGTC
AGATCAATCGCCTTGTTGGACAGACTGTATCTAAGGAAGAGGAAACGACG
AGAACACCTGTCAGAAGATATAATCTCCATGGTAGTCTTGGAGATTCTGA
TACTGATATTGTTGCATTAAATAACTTTATGGATGCTCAGTATTTTGGGG
AGGTTAGTATTGGCACACCTTCCCAGACCTTCACTGTGATATTTGACACA
GGAAGTTCTAATCTTTGGGTGCCTTCTGCGAAGTGTTATTTCTCAGTTTC
TTGCTATTTCCACTCCAAGTATAAGTCCAGCCATTCAAGTACCTACAAAA
GGAATGGGACATCTGCCGCAATCCAATATGGGACTGGAGCAATTTCTGGT
TTCTTTAGCCAGGACAATGTGAAAGTTGGTGATCTTGTTGTTAAGAATCA
GGATTTCATTGAGGCAACCAAAGAAGCTAGCATCACATTCTTGGCAGCCA
AGTTTGATGGTATACTTGGGCTTGGATTTCAAGAGATCTCAAATGGAAAA
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