DR403290

Overview
NameDR403290
Unique NameDR403290
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 43/131 (32.82%), Postives = 64/131 (48.85%), Query Frame = 2
Query:  200 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 45/141 (31.91%), Postives = 68/141 (48.23%), Query Frame = 2
Query:  170 YGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            +G L S    +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   +R  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL
Sbjct:    5 FGKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF12_CAEBR (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis briggsae GN=arf-1.2 PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 43/131 (32.82%), Postives = 64/131 (48.85%), Query Frame = 2
Query:  200 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGL 145          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARL8_DICDI (ADP-ribosylation factor-like protein 8 OS=Dictyostelium discoideum GN=arl8 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 41/149 (27.52%), Postives = 75/149 (50.34%), Query Frame = 2
Query:  149 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQ-PTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            M  F+       SL  W++E ++  +GL  +GKTTL++++ +   ++   PT     ++++ G +  K +D+GG    R +W                   E+F +SK+ L  L++   LA +P L++ NK D+P +A  DE+  +L L
Sbjct:    1 MNFFESIINFFKSL-FWKQEMELTLVGLQGSGKTTLVNVISNGGFIEDTIPTIGFNMKKVTKGNVTIKLWDIGGQPRFRSMWERYCRGVNAIVFVVDSADREKFEQSKQALQDLINKPPLAKIPLLVVANKNDLPNSAGVDEMIQNLDL 148          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 53/182 (29.12%), Postives = 76/182 (41.76%), Query Frame = 2
Query:  167 FYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEXFKWL 712
            F+  + SL   +K+ +IL +GLD AGK+TLL  LK   +V   PT     E +    +    +D+GG    R +W                   ER  E K E+D LL  + L  +  L+L NK D+  A +  E+   L L +    K  V              CS +R  G  E F W+
Sbjct:   12 FFSNIFSLFEGKKDTRILMIGLDGAGKSTLLFKLKLGDVVLTIPTIGFNVETIVYKNLSMTVWDVGGQHKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDNLLIQDELKGIQILVLANKQDMNNAMNTAEIVNSLNLNSIKDRKWYVQ------------PCSAIRSDGIYEGFDWV 181          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF2_YEAST (ADP-ribosylation factor 2 OS=Saccharomyces cerevisiae GN=ARF2 PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 41/130 (31.54%), Postives = 62/130 (47.69%), Query Frame = 2
Query:  203 KEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            KE +IL +GLD AGKTT+L+ LK   ++   PT     E +    I F  +D+GG    R +W                    R  E++  +  +L+++ L N  +L+  NK D+P A S  E+   LGL
Sbjct:   16 KEMRILMVGLDGAGKTTVLYKLKLGEVITTIPTIGFNVETVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQDLPEAMSAAEITEKLGL 145          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARL14_HUMAN (ADP-ribosylation factor-like protein 14 OS=Homo sapiens GN=ARL14 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 42/135 (31.11%), Postives = 70/135 (51.85%), Query Frame = 2
Query:  173 GILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGK-IKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDEL 574
            G L S     K+A++L LGLD+AGK+TLL+ LK  + +   PT     E + + +      +D+GG +  R VW                   +R  ES+R+ + +L +E + NVP ++L NK D+P A + +++
Sbjct:    2 GSLGSKNPQTKQAQVLLLGLDSAGKSTLLYKLKLAKDITTIPTIGFNVEMIELERNFSLTVWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNVPVVLLANKQDMPGALTAEDI 136          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 42/133 (31.58%), Postives = 65/133 (48.87%), Query Frame = 2
Query:  200 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTN 598
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   +R  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL +
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNS 147          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 43/131 (32.82%), Postives = 64/131 (48.85%), Query Frame = 2
Query:  200 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGL 145          
BLAST of DR403290 vs. ExPASy Swiss-Prot
Match: ARF1_XENLA (ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf1 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 43/131 (32.82%), Postives = 64/131 (48.85%), Query Frame = 2
Query:  200 QKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGL 592
            +KE +IL +GLD AGKTT+L+ LK   +V   PT     E +    I F  +D+GG    R +W                   ER  E++ EL  +L+++ L +   L+  NK D+P A +  E+   LGL
Sbjct:   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL 145          
The following BLAST results are available for this feature:
BLAST of DR403290 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 161
Match NameE-valueIdentityDescription
ARF1_CHLRE4.571e-1232.82ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_ARATH4.571e-1231.91ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF12_CAEBR4.571e-1232.82ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARL8_DICDI5.970e-1227.52ADP-ribosylation factor-like protein 8 OS=Dictyost... [more]
ARFK_DICDI5.970e-1229.12ADP-ribosylation factor K OS=Dictyostelium discoid... [more]
ARF2_YEAST5.970e-1231.54ADP-ribosylation factor 2 OS=Saccharomyces cerevis... [more]
ARL14_HUMAN7.798e-1231.11ADP-ribosylation factor-like protein 14 OS=Homo sa... [more]
ARF_MAIZE7.798e-1231.58ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]
ARF_DUGJA7.798e-1232.82ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]
ARF1_XENLA7.798e-1232.82ADP-ribosylation factor 1 OS=Xenopus laevis GN=arf... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244H17 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244H17 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403290 ID=DR403290; Name=DR403290; organism=Citrus sinensis; type=EST; length=714bp
GGGGATTTCTAGTTTTTTCCTTCTTAGGTTTTGCTGGTATCACGCACTCG
TTGATTCCTCCTAATTATCTCAAAGATTCATCATATTTCAGCCAAAATTC
GATCTTTTTGATAGATTCATTATAAATAAGGAGTAATAAAAGAAACCCAT
GTTTTTGTTTGATTGGTTTTATGGGATTCTTGCATCTCTTGGGCTCTGGC
AAAAAGAGGCCAAGATCTTGTTTCTCGGCCTCGATAATGCCGGTAAAACG
ACGCTGCTTCATATGTTGAAAGATGAGAGATTAGTGCAACATCAACCAAC
ACAACATCCCACTTCGGAGGAACTGAGTATTGGGAAAATCAAGTTTAAGG
CTTTTGATTTGGGAGGGCATCAGATTGCTCGTAGAGTTTGGAAAGATTAC
TACGCCAAGGTTGATGCGGTTGTGTACCTGGTAGATGCGTATGACAAGGA
GAGGTTTGCTGAGTCGAAAAGGGAGCTTGATGCCCTTCTTTCAGATGAAT
CCTTGGCCAATGTTCCATTCCTTATTTTGGGCAACAAAATTGATATCCCA
TATGCTGCGTCAGAAGATGAGTTGCGATATCACCTTGGACTGACCAACTT
CACCACTGGCAAGGGTAAGGTGAATCTGGTTGATTCAAACGTTCGTCCCC
TTGAGGTATTCATGTGCAGCATTGTCCGCAAAATGGGTTACGGAGAGNNA
TTTAAGTGGCTGTC
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