DR403241

Overview
NameDR403241
Unique NameDR403241
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length755
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10980 contig Csv1_Contig10980:108..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403241 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.526e-13
Identity = 45/137 (32.85%), Postives = 78/137 (56.93%), Query Frame = 3
Query:  330 RSLSQVLNFMDQMTENPFF-------SGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR------XXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQV 701
            R++ Q+++ MD++ E+          SGT G +R  WD  + ++ + +  DMPGL KEDV+VS+E + LVI+                 +   Y +R+ LP+ + + D+IKAE+KNGVL +++PK + E++    Q+
Sbjct:  100 RTMRQMIDTMDRLFEDTMTFPGRNRASGT-GEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHSWGRNYSSYDTRLSLPDNVVK-DKIKAELKNGVLFISIPKTEVEKKVIDVQI 234          
BLAST of DR403241 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.286e-12
Identity = 44/134 (32.84%), Postives = 74/134 (55.22%), Query Frame = 3
Query:  330 RSLSQVLNFMDQMTENPFFSGTR----GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXXSVRR-----YTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 704
            RS+ Q+L+ MD++ E+      R    G +R  W+ K+ +  + +  DMPG+ KEDV+VS+E + LVI+              R     Y +R+ LP+   + +++KAE+K+GVL +T+PK K E      Q++
Sbjct:  100 RSMRQMLDTMDRIFEDAITIPGRNIGGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDCWSRKSYSCYDTRLKLPDNCEK-EKVKAELKDGVLYITIPKTKIERTVIDVQIQ 232          
BLAST of DR403241 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.685e-12
Identity = 47/144 (32.64%), Postives = 75/144 (52.08%), Query Frame = 3
Query:  330 RSLSQVLNFMDQMTEN--------PFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR-----------XXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 704
            R++ Q+L+ MD++ ++        P  S   G +R  WD  E D  + +  DMPGL +E+V+V +E + LVIR                      SV  Y  R+ LP++  ++ +++AE+KNGVL VTVPK + E +    QV+
Sbjct:   98 RTMRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKS-KVRAELKNGVLLVTVPKTEVERKVIDVQVQ 240          
BLAST of DR403241 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.603e-11
Identity = 46/142 (32.39%), Postives = 73/142 (51.41%), Query Frame = 3
Query:  330 RSLSQVLNFMDQMTENPFFSGTRGG------LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR-----------XXXXXXXXXXXSVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 704
            R++ Q+L+ MD++ ++     TR         R  WD  E +  + +  DMPGL +E+VRV +E + LVIR                      SV  Y  R+ LP++  ++ Q++AE+KNGVL V+VPK + E +    QV+
Sbjct:   98 RTMRQMLDTMDRLFDDAVGFPTRRSPAARARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGGDGWWKERSVSSYDMRLALPDECDKS-QVRAELKNGVLLVSVPKRETERKVIDVQVQ 238          
The following BLAST results are available for this feature:
BLAST of DR403241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
HS21C_SOLLC3.526e-1332.85Small heat shock protein, chloroplastic OS=Solanum... [more]
HS21C_PEA2.286e-1232.84Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS26P_ORYSJ8.685e-1232.6426.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS21C_WHEAT9.603e-1132.39Small heat shock protein, chloroplastic OS=Triticu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244E20 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244E20 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403241 ID=DR403241; Name=DR403241; organism=Citrus sinensis; type=EST; length=755bp
GGGGGTCTTCAGCAAGAAATCAGCCGCACTCACAAAAAGTATTTTGAAAT
CTCTGCATTGTTTCGTGCTTTCTTTAAGAATTCGGCTCAATGGCGTCCTC
TCTTGCTCTCAAGAGGCTTGCTTCTTCTAATGTCATACCCAGGGCTTTAC
GCTGCACCGTCGCTCCTTCTGCTACTTCAGCATCTCGGTTCTTCAACACA
AACGCTGTTCATCAATACGATGACGGCGGAGACGACCGTGATCTCGACAT
TGATCGCCGTTCCGCTCGCTCTTTCCCTCGCCGTCGTGACGACTTCTTCT
CAGATGTGTTTGATCCATTTTCACCAACAAGGAGCCTGAGCCAGGTCCTG
AACTTCATGGATCAGATGACGGAGAATCCTTTCTTCAGCGGCACACGTGG
TGGACTGCGCAGAGGCTGGGATGCTAAAGAAACCGATGATGCGTTGAACC
TCAGCATCGACATGCCAGGGCTGGGCAAGGAAGACGTGAGAGTCTCTCTG
GAGCAGAACACGCTGGTGATCAGAGGCGAGGGCGGAAAAGAAGGAGAGGA
CGAAGAGAGCGTGCGTAGGTACACCAGCAGGATTGATTTGCCAGAGAAGC
TCTACAGGACTGATCAGATCAAGGCTGAGATGAAGAATGGTGTGCTGAAA
GTGACGGTGCCCAAGGTGAAGGAAGAGGAGAGGGCTGATGTGTTCCAAGT
GAAGGTTGATTAAAGAGTTGGCTTTTAGTAGTAGCTTTTCTGTCCAGGAT
ATTGA
back to top