DR403236

Overview
NameDR403236
Unique NameDR403236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 1.942e-27
Identity = 63/152 (41.45%), Postives = 91/152 (59.87%), Query Frame = 3
Query:   72 SQMASKRINKELKDLQKDPPAS---CSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 515
            + +A +RI +E K++ K    S        V ++    +  I GP D+P+ GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:    2 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 1.942e-27
Identity = 63/152 (41.45%), Postives = 91/152 (59.87%), Query Frame = 3
Query:   72 SQMASKRINKELKDLQKDPPAS---CSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 515
            + +A +RI +E K++ K    S        V ++    +  I GP D+P+ GG + + I  P  YPF PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:    2 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 5.652e-27
Identity = 63/154 (40.91%), Postives = 89/154 (57.79%), Query Frame = 3
Query:   72 SQMASKRINKELKDLQKDPP---ASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 521
            + MA  RI +E K++ +       S     V D     +  I GP D+P+ GG F++ I  P  YPF PPKV F T+++HPNI+S  G+ICLDILK+ W+ A+T+  VLLS+ +LL    PDDP    +A+ +K     +  TA+ WT  YA G
Sbjct:    2 ANMAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYAGG 155          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.148e-26
Identity = 56/146 (38.36%), Postives = 91/146 (62.33%), Query Frame = 3
Query:   81 ASKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 512
            AS+R+ KEL++++K    +     V + ++  WQ  I+ P + P+  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+   A  +T+KY
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.148e-26
Identity = 56/146 (38.36%), Postives = 91/146 (62.33%), Query Frame = 3
Query:   81 ASKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 512
            AS+R+ KEL++++K    +     V + ++  WQ  I+ P + P+  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+   A  +T+KY
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.148e-26
Identity = 56/146 (38.36%), Postives = 91/146 (62.33%), Query Frame = 3
Query:   81 ASKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 512
            AS+R+ KEL++++K    +     V + ++  WQ  I+ P + P+  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+   A  +T+KY
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.805e-26
Identity = 57/151 (37.75%), Postives = 88/151 (58.28%), Query Frame = 3
Query:   72 SQMASKRINKELKDLQKDPPASCSAGPVADD-MFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 482
            S+ A KR+ KEL+ L KD P    AGP +++ +F W   I GP D+P+A GVF   + FP DYP  PPK+ F   + HPNI  NG +C+ IL             +E+WSP  ++ K+LLS+ S+L++PN +     +   +++ +R ++E
Sbjct:    2 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFE 152          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.805e-26
Identity = 56/146 (38.36%), Postives = 91/146 (62.33%), Query Frame = 3
Query:   81 ASKRINKELKDLQKDPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 512
            AS+R+ KEL++++K    +     V + ++  WQ  I+ P + P+  G F + I+FP +YPFKPPK+ F+TK++HPNI+  G +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+   A  +T+KY
Sbjct:    3 ASRRLMKELEEIRKCGMKNFRNIRVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.663e-26
Identity = 61/156 (39.10%), Postives = 94/156 (60.26%), Query Frame = 3
Query:   75 QMASKRINKELKDLQKDPPASCSAGPVADD--MFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRAKYETTARSWTQKYAMG*EG 530
            Q +  R+ KE K++Q++  A      + DD  +F W A I GPS++P+ GGVF ++   P  YP +PP+V F TK+FHPN++   G ICLDILK  WSPA T+  V  +I +L+  P PD PL  +  ++ ++ D   + + A+ +T+  AM  +G
Sbjct:    2 QASRARLFKEYKEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFNSMAQMYTRLAAMPKKG 157          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UBC16_SCHPO (Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccharomyces pombe GN=ubc16 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.663e-26
Identity = 62/149 (41.61%), Postives = 89/149 (59.73%), Query Frame = 3
Query:   87 KRINKELKDLQK-DPPASCSAGPVAD-DMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKT-DRAKYETTARSWTQKYAMG 521
            KR++KE    Q  D        PV D DMFHW+A I GP+++P+ GG +++ IH    YP  PP V F+TK+ HPNI+ +NG +C+DILK  WSPA ++    L+I SLL++ +   PL  + A + +T D+  Y +  R  T  YA G
Sbjct:    6 KRLHKEYASFQAGDISGLLLLKPVTDVDMFHWKAVIEGPTETPYEGGQWVLDIHVHEGYPISPPSVYFQTKIVHPNISWTNGEVCMDILKTHWSPAWSLQSACLAIISLLSNYDASSPLNVDAAKLLRTGDKTAYNSLVRCTTYLYAKG 154          
The following BLAST results are available for this feature:
BLAST of DR403236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2K_HUMAN1.942e-2741.45Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN1.942e-2741.45Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBCD4_DROME5.652e-2740.91Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UB2L3_MOUSE2.148e-2638.36Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN2.148e-2638.36Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN2.148e-2638.36Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UBC7_YEAST2.805e-2637.75Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UB2L3_PONAB2.805e-2638.36Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UBC21_ARATH3.663e-2639.10Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBC16_SCHPO3.663e-2641.61Ubiquitin-conjugating enzyme E2 16 OS=Schizosaccha... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244E12 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403236 ID=DR403236; Name=DR403236; organism=Citrus sinensis; type=EST; length=576bp
GGGGGACTTTGACTCGCAACTTTAAATAACACCAGACCCAAACTCTCAGG
CCACNANNTTTGTTGAGAAATTCCCAGATGGCTTCAAAACGGATCAACAA
GGAGTTGAAGGACCTACAGAAGGACCCTCCTGCTTCTTGTAGCGCTGGCC
CTGTTGCTGATGACATGTTCCATTGGCAAGCAACAATTATGGGCCCATCA
GACAGCCCATTTGCTGGGGGTGTATTTCTTGTATCCATTCATTTCCCACC
TGATTATCCATTCAAGCCACCGAAGGTGGCCTTCCGTACCAAGGTTTTCC
ACCCTAACATCAACAGCAATGGTAGCATCTGTCTTGACATTCTCAAGGAG
CAGTGGAGCCCTGCTTTGACAATATCCAAGGTACTTCTGTCAATTTGCTC
ACTACTTACTGATCCGAACCCAGATGACCCACTTGTGCCTGAGATTGCTC
ACATGTACAAGACTGACAGAGCCAAATATGAGACTACTGCTCGATCCTGG
ACTCAGAAGTATGCCATGGGTTAAGAGGGGCTAGGCTGTATGCCCCTGAG
AACATTAATGGCTTGTGGTCCTATTA
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