DR403236

Overview
NameDR403236
Unique NameDR403236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UBC18_ARATH (Probable ubiquitin carrier protein E2 18 OS=Arabidopsis thaliana GN=UBC18 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.015e-16
Identity = 44/114 (38.60%), Postives = 66/114 (57.89%), Query Frame = 3
Query:   72 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 410
            S++A  R+ KEL + Q +PP       V D++  W   + G   + +A   + + + FP  YP + P+V F      HP+I SNG ICLDIL + WSPA+T+S V +SI S+L+
Sbjct:   13 SKIACNRLQKELSEWQVNPPTGFKHR-VTDNLQKWVIEVTGAPGTLYANETYNLQVEFPQHYPMEAPQVIFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSVCISILSMLS 125          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 2.015e-16
Identity = 43/114 (37.72%), Postives = 67/114 (58.77%), Query Frame = 3
Query:   72 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 410
            S++A  R+ KEL + Q +PP       V D++  W   + G   + +A   + + + FP  YP + P+V F +    HP+I SNG ICLDIL + WSPA+T++ V +SI S+L+
Sbjct:   13 SKIACNRLQKELSEWQLNPPTGFRH-KVTDNLQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISILSMLS 125          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.631e-16
Identity = 45/140 (32.14%), Postives = 74/140 (52.86%), Query Frame = 3
Query:   81 ASKRINKELKDLQKDPPASCS-AGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARS 497
            A  RI K++ DL+     S S   P+  ++ H +   + P +  + GG F   I    +YP  PPKV    K++HPNI+  G++CL+IL++ W+P L ++ +L+ +  L   PN +DPL  E A     D   + +  R+
Sbjct:   24 AQIRIQKDVTDLEIPSTMSTSWPDPIKLNVLHLE---IRPDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVRT 160          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UBE2W_DICDI (Probable ubiquitin-conjugating enzyme E2 W OS=Dictyostelium discoideum GN=ube2w PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.437e-16
Identity = 47/110 (42.73%), Postives = 63/110 (57.27%), Query Frame = 3
Query:   84 SKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 410
            +KR+ KEL DL+ +PP  C +    D++  W   + G   S + G  F +   F   YP   P+V F  T   HP+I SNG ICL IL + WSPALT+S V LSI S+L+
Sbjct:    6 AKRLQKELLDLKTNPPP-CISITEGDNLDKWVIAVDGTEGSIYQGEHFKLQFKFSSGYPLDSPEVIFIGTPPIHPHIYSNGHICLSILYDNWSPALTVSSVCLSILSMLS 114          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.656e-16
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 3
Query:   99 KELKDLQKDPPASCSAGPVADDMFHWQATIMGPS-DSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 482
            +EL D +K  P+         ++F W   +M  + DS + GG F   + FP D+PF PP+  F   ++HPN+  +G +C+ IL             E WSP  T+  VL+SI SLL DPN + P   + A  Y+ +  +Y+
Sbjct:   17 RELTDPKKAIPSFHIELEDDSNIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSGDPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYK 157          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.656e-16
Identity = 43/133 (32.33%), Postives = 69/133 (51.88%), Query Frame = 3
Query:   69 NSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQA----TIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHM 455
            N   A  R+ ++L  L   P  + +     D     Q+     I+ P +  +  G    ++ F   YP +PPKV    K+FHPNI+  G++CL+IL+E WSPAL +  ++  +  L  +PNP+DPL  + A +
Sbjct:   24 NLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKL 156          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UBE2F_RAT (NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicus GN=Ube2f PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.706e-15
Identity = 48/157 (30.57%), Postives = 73/157 (46.50%), Query Frame = 3
Query:   66 RNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 515
            R   +  K + KE+ +L+ + P +C       +  H     + P +  + GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  D+  +      + ++YA
Sbjct:   28 RRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYA 184          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.706e-15
Identity = 40/114 (35.09%), Postives = 68/114 (59.65%), Query Frame = 3
Query:   72 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKV-FHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 410
            +++A+ R+ KE  + Q +PP+      V+D++  W   + G   + +A   + + + FP  YP + P+V F+     HP+I SNG ICLD+L + WSPA+ +S + LSI S+L+
Sbjct:   13 TKIATNRLQKEFMEWQTNPPSGFKHR-VSDNLQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSILSMLS 125          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.706e-15
Identity = 36/103 (34.95%), Postives = 59/103 (57.28%), Query Frame = 3
Query:  189 MGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARS 497
            + P +  + GG F  S+ F   YP +PP V     ++HPNI+ +G+ICL++L+E WSP + +  V+L +  L  +PN  DPL  + A     D  ++ET  ++
Sbjct:   65 ISPEEGVYRGGHFRFSVVFRDTYPIEPPTVKCLNTIYHPNIDYSGNICLNVLREDWSPVMDLQTVVLGLLFLFLEPNGSDPLNRQAADTMLRDPYRFETNVQA 167          
BLAST of DR403236 vs. ExPASy Swiss-Prot
Match: UB2FA_MOUSE (NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=Ube2f PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.706e-15
Identity = 48/157 (30.57%), Postives = 73/157 (46.50%), Query Frame = 3
Query:   66 RNSQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 515
            R   +  K + KE+ +L+ + P +C       +  H     + P +  + GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  D+  +      + ++YA
Sbjct:   28 RRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRDKVDEYIKRYA 184          
The following BLAST results are available for this feature:
BLAST of DR403236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBC18_ARATH2.015e-1638.60Probable ubiquitin carrier protein E2 18 OS=Arabid... [more]
UBC15_ARATH2.015e-1637.72Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]
UBC12_SCHPO2.631e-1632.14NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]
UBE2W_DICDI3.437e-1642.73Probable ubiquitin-conjugating enzyme E2 W OS=Dict... [more]
UBC3_YEAST7.656e-1633.33Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UBC12_YEAST7.656e-1632.33NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UBE2F_RAT1.706e-1530.57NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicu... [more]
UBC17_ARATH1.706e-1535.09Probable ubiquitin carrier protein E2 17 OS=Arabid... [more]
UBC12_ASHGO1.706e-1534.95NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii ... [more]
UB2FA_MOUSE1.706e-1530.57NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244E12 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403236 ID=DR403236; Name=DR403236; organism=Citrus sinensis; type=EST; length=576bp
GGGGGACTTTGACTCGCAACTTTAAATAACACCAGACCCAAACTCTCAGG
CCACNANNTTTGTTGAGAAATTCCCAGATGGCTTCAAAACGGATCAACAA
GGAGTTGAAGGACCTACAGAAGGACCCTCCTGCTTCTTGTAGCGCTGGCC
CTGTTGCTGATGACATGTTCCATTGGCAAGCAACAATTATGGGCCCATCA
GACAGCCCATTTGCTGGGGGTGTATTTCTTGTATCCATTCATTTCCCACC
TGATTATCCATTCAAGCCACCGAAGGTGGCCTTCCGTACCAAGGTTTTCC
ACCCTAACATCAACAGCAATGGTAGCATCTGTCTTGACATTCTCAAGGAG
CAGTGGAGCCCTGCTTTGACAATATCCAAGGTACTTCTGTCAATTTGCTC
ACTACTTACTGATCCGAACCCAGATGACCCACTTGTGCCTGAGATTGCTC
ACATGTACAAGACTGACAGAGCCAAATATGAGACTACTGCTCGATCCTGG
ACTCAGAAGTATGCCATGGGTTAAGAGGGGCTAGGCTGTATGCCCCTGAG
AACATTAATGGCTTGTGGTCCTATTA
back to top