DR403213

Overview
NameDR403213
Unique NameDR403213
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 8.310e-67
Identity = 147/241 (61.00%), Postives = 170/241 (70.54%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSARE-ALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGY------GLKPAQPQ-GDSFFHALE--CEPTLQIG 700
            MGRG VELKRIENKI  QVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS  SM +TLERYQK +YG P+  +  +E  L  SS+ EYLKLKAR E LQR+QRNLLGE+LG L  KELE LE+QLD SL+ IRSTRTQ+MLD LT+LQ +EQ+L EANK L+++             L E  Q++       A   GY       ++   P  G+ FFH+LE   EPTLQIG
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSGQSMTRTLERYQKFSYGGPDTAIQNKENELVQSSRNEYLKLKARVENLQRTQRNLLGEDLGTLGIKELEQLEKQLDSSLRHIRSTRTQHMLDQLTDLQRREQMLCEANKCLRRK-------------LEESNQLHGQVWEHGATLLGYERQSPHAVQQVPPHGGNGFFHSLEAAAEPTLQIG 228          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: CMB1_DIACA (MADS-box protein CMB1 OS=Dianthus caryophyllus GN=CMB1 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.373e-61
Identity = 122/172 (70.93%), Postives = 144/172 (83.72%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 523
            MGRG VELKRIENKI  QVTFAKRRNGLLKKAYELSVLCDAEVALI+FSNRGKLYEFCS+S M KTLERYQ+C+YG+ E +  ++E    SS QEYLKLKA+ + LQRS RNLLGE+LG L++KELE LE QLD SL+QIRS +TQ+MLD L +LQ KE++L E+N+ LK +
Sbjct:    1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSCMNKTLERYQRCSYGSLETSQPSKET--ESSYQEYLKLKAKVDVLQRSHRNLLGEDLGELSTKELEQLEHQLDKSLRQIRSIKTQHMLDQLADLQKKEEMLFESNRALKTK 170          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSJ (MADS-box transcription factor 5 OS=Oryza sativa subsp. japonica GN=MADS5 PE=1 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.399e-58
Identity = 128/231 (55.41%), Postives = 157/231 (67.97%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIG 700
            MGRG VELKRIENKI  QVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RG+L+EF +SS M KTLERY+ CNY       SA    ELS+ QEYLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK++           +Q   G  +    L+ S +D G     ++   +   HA+ C+P+L IG
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRK-----------IQETSGENM----LHISCQDVGPSGHASEANQEFLHHAI-CDPSLHIG 215          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MADS5_ORYSI (MADS-box transcription factor 5 OS=Oryza sativa subsp. indica GN=MADS5 PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 5.399e-58
Identity = 128/231 (55.41%), Postives = 157/231 (67.97%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIG 700
            MGRG VELKRIENKI  QVTFAKRRNGLLKKAYELSVLCDAEVALIIFS RG+L+EF +SS M KTLERY+ CNY       SA    ELS+ QEYLKLK R E LQ +QRNLLGE+L PL+ KELE LE Q+++SL  IRS++ Q +LD + EL+ KEQ L +ANK LK++           +Q   G  +    L+ S +D G     ++   +   HA+ C+P+L IG
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGRLFEFSTSSCMYKTLERYRSCNYNLNSCEASAALETELSNYQEYLKLKTRVEFLQTTQRNLLGEDLVPLSLKELEQLENQIEISLMNIRSSKNQQLLDQVFELKRKEQQLQDANKDLKRK-----------IQETSGENM----LHISCQDVGPSGHASEANQEFLHHAI-CDPSLHIG 215          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=1 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 2.508e-55
Identity = 122/224 (54.46%), Postives = 159/224 (70.98%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS-SSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHA---AFAGLQLMEGYQ--------VNTLQLNPSAEDCGYGLKPAQ 643
            MGRG VELKRIENKI  QVTFAKRRNGLLKKAYELSVLCDAE+AL+IFSNRGKLYEFCSS S M +T+++Y+K +Y   +PN SA++  +    Q+YLKLK+R E LQ SQR+LLGEEL  ++  ELE LERQ+D SL+QIRST+ + MLD L++L+ KE++L E N+ L+++      A   +F G    E  Q        +++ Q NP  ++ G+  KP Q
Sbjct:    1 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSSPSGMARTVDKYRKHSYATMDPNQSAKDLQD--KYQDYLKLKSRVEILQHSQRHLLGEELSEMDVNELEHLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRKLEDSDAALTQSFWGSSAAEQQQQHQQQQQGMSSYQSNPPIQEAGF-FKPLQ 221          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSJ (MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.123e-54
Identity = 111/172 (64.53%), Postives = 133/172 (77.33%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 523
            MGRG VELKRIENKI  QVTFAKRRNGLLKKAYELS+LCDAEVALIIFS RG+L+EF SSS M KTLERY+ CNY + +      E     + QEYLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEI----NYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKK 168          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MADS1_ORYSI (MADS-box transcription factor 1 OS=Oryza sativa subsp. indica GN=MADS1 PE=2 SV=2)

HSP 1 Score: 212.231 bits (539), Expect = 2.123e-54
Identity = 111/172 (64.53%), Postives = 133/172 (77.33%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 523
            MGRG VELKRIENKI  QVTFAKRRNGLLKKAYELS+LCDAEVALIIFS RG+L+EF SSS M KTLERY+ CNY + +      E     + QEYLKLK R E LQ +QRN+LGE+LGPL+ KELE LE Q+++SLKQIRS + Q +LD L +L+ KEQ L + NK L+++
Sbjct:    1 MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEI----NYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKK 168          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.390e-52
Identity = 124/235 (52.77%), Postives = 152/235 (64.68%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRT----MTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIG 700
            MGRG VELKRIENKI  QVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF  S+ + KTLERYQ C Y A + N +  E    S   E  KLKA++EALQR+QR+LLGE+LGPL+ KEL+ LE+QL+ +L Q R  +TQ M++ + EL+ KE+ L E N+ LK +      T  + A       +G  V              G    QP   S   A++ EPTLQIG
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGITKTLERYQHCCYNAQDSNNALSET--QSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTSNYRAMQQASWAQGAVVEN------------GAAYVQPPPHS--AAMDSEPTLQIG 218          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 9.862e-52
Identity = 118/231 (51.08%), Postives = 150/231 (64.94%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALECEPTLQIG 700
            MGRG VELKRIENKI  QVTF+KRRNGLLKKAYELSVLCDAEVALIIFS+RGKLYEF  S+ + KTLE+Y  C Y A   N +       S  QE  +LK + E LQRSQR++LGE+LGPL+ KEL+ LE+QL+ SL Q R  +TQ M++ + +L+ KE+ L E NK LK +      ++     + + +   T+         G  +  AQP  D     ++CEPTLQIG
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSSNCRSAIQDSWVHGTVV-------SGGRVLNAQPPPD-----IDCEPTLQIG 218          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MAD34_ORYSJ (MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.748e-51
Identity = 103/172 (59.88%), Postives = 135/172 (78.49%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 523
            MGRG V L+RIENKI  QVTFAKRRNGLLKKAYELS+LCDAEVAL++FS+ G+LY+F SSS+M+KTLERYQ+  Y + +      + ++ ++ QEY+ LKA  E LQ+SQRNLLGE+L PL + ELE LE Q+  +LKQIRS +TQ +LD L +L+ KEQ+L +AN+ LK++
Sbjct:    1 MGRGKVVLQRIENKISRQVTFAKRRNGLLKKAYELSILCDAEVALVLFSHAGRLYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQ-NNYQEYVNLKAHVEILQQSQRNLLGEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRK 171          
The following BLAST results are available for this feature:
BLAST of DR403213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MADS8_ORYSJ8.310e-6761.00MADS-box transcription factor 8 OS=Oryza sativa su... [more]
CMB1_DIACA1.373e-6170.93MADS-box protein CMB1 OS=Dianthus caryophyllus GN=... [more]
MADS5_ORYSJ5.399e-5855.41MADS-box transcription factor 5 OS=Oryza sativa su... [more]
MADS5_ORYSI5.399e-5855.41MADS-box transcription factor 5 OS=Oryza sativa su... [more]
AGL3_ARATH2.508e-5554.46Agamous-like MADS-box protein AGL3 OS=Arabidopsis ... [more]
MADS1_ORYSJ2.123e-5464.53MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS1_ORYSI2.123e-5464.53MADS-box transcription factor 1 OS=Oryza sativa su... [more]
MADS6_ORYSJ3.390e-5252.77MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MAD17_ORYSJ9.862e-5251.08MADS-box transcription factor 17 OS=Oryza sativa s... [more]
MAD34_ORYSJ3.748e-5159.88MADS-box transcription factor 34 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244D08 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403213 ID=DR403213; Name=DR403213; organism=Citrus sinensis; type=EST; length=701bp
GGGGAAAATGGGAAGGGGTATGGTTGAGTTGAAGAGGATAGAGAACAAGA
TCAANNNNCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGAAGAAA
GCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTT
CTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGGTCA
AAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACCGAAT
GTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAA
GCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTG
GAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGG
CAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACAT
GCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAG
CAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCGCTTTT
GCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAATTGAA
TCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCTCAGG
GCGATAGCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAATTGGA
T
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