DR403213

Overview
NameDR403213
Unique NameDR403213
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:26..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MEF2C_BOVIN (Myocyte-specific enhancer factor 2C OS=Bos taurus GN=MEF2C PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 38/74 (51.35%), Postives = 55/74 (74.32%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCN 229
            MGR  +++ RI ++   QVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSTNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 38/74 (51.35%), Postives = 55/74 (74.32%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCN 229
            MGR  +++ RI ++   QVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MEF2A_PONAB (Myocyte-specific enhancer factor 2A OS=Pongo abelii GN=MEF2A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 38/74 (51.35%), Postives = 55/74 (74.32%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCN 229
            MGR  +++ RI ++   QVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MEF2A_MOUSE (Myocyte-specific enhancer factor 2A OS=Mus musculus GN=Mef2a PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 38/74 (51.35%), Postives = 55/74 (74.32%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCN 229
            MGR  +++ RI ++   QVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MEF2A_CHICK (Myocyte-specific enhancer factor 2A OS=Gallus gallus GN=MEF2A PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.102e-13
Identity = 38/74 (51.35%), Postives = 55/74 (74.32%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCN 229
            MGR  +++ RI ++   QVTF KR+ GL+KKAYELSVLCD E+ALIIF++  KL+++ +S+ M K L +Y + N
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQY-ASTDMDKVLLKYTEYN 73          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MEF2B_HUMAN (Myocyte-specific enhancer factor 2B OS=Homo sapiens GN=MEF2B PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 39/89 (43.82%), Postives = 61/89 (68.54%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALE 274
            MGR  +++ RI ++   QVTF KR+ GL+KKAYELSVLCD E+ALIIF++  +L+++ +S+ M + L +Y +  Y  P  + +  + LE
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQY-ASTDMDRVLLKYTE--YSEPHESRTNTDILE 86          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MEF2B_MOUSE (Myocyte-specific enhancer factor 2B OS=Mus musculus GN=Mef2b PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 38/89 (42.70%), Postives = 61/89 (68.54%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALE 274
            MGR  +++ RI ++   QVTF KR+ GL+KKAYELSVLCD ++ALIIF++  +L+++ +SS M + L +Y +  Y  P  + +  + L+
Sbjct:    1 MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCDIALIIFNSAQRLFQY-ASSDMDRVLLKYTE--YSEPHESRTNADILQ 86          
The following BLAST results are available for this feature:
BLAST of DR403213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MEF2C_BOVIN3.102e-1351.35Myocyte-specific enhancer factor 2C OS=Bos taurus ... [more]
MEF2A_XENLA3.102e-1351.35Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_PONAB3.102e-1351.35Myocyte-specific enhancer factor 2A OS=Pongo abeli... [more]
MEF2A_MOUSE3.102e-1351.35Myocyte-specific enhancer factor 2A OS=Mus musculu... [more]
MEF2A_CHICK3.102e-1351.35Myocyte-specific enhancer factor 2A OS=Gallus gall... [more]
MEF2B_HUMAN1.179e-1243.82Myocyte-specific enhancer factor 2B OS=Homo sapien... [more]
MEF2B_MOUSE4.479e-1242.70Myocyte-specific enhancer factor 2B OS=Mus musculu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244D08 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403213 ID=DR403213; Name=DR403213; organism=Citrus sinensis; type=EST; length=701bp
GGGGAAAATGGGAAGGGGTATGGTTGAGTTGAAGAGGATAGAGAACAAGA
TCAANNNNCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGAAGAAA
GCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTT
CTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGGTCA
AAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACCGAAT
GTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAA
GCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTG
GAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGG
CAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACAT
GCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAG
CAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCGCTTTT
GCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAATTGAA
TCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCTCAGG
GCGATAGCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAATTGGA
T
back to top