DR403213

Overview
NameDR403213
Unique NameDR403213
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.774e-27
Identity = 88/268 (32.84%), Postives = 130/268 (48.51%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQ----EYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAG-------------LQLM--------EGYQVNTLQLNP------SAEDCGYGLKPAQPQ------GDSFFHALECEPTLQI 697
            MGRG +E+KRIEN    QVTF+KRR GLLKKA EL+VLCDA V ++IFS+ GK++E+CS + S+ + +E YQ          V+     E++  Q    E  +++   E L    R   G++L  L   ++  LE+QL+ S+ ++R+ + Q +   L  L+ KE +L + N  L +      H A  G             L ++        E      LQL P      +A   G+ L+P QP         S FHA      LQ+
Sbjct:    1 MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQ---------TVTNTHFEEINHDQQIFVEMTRMRNEMEKLDGGIRRFTGDDLSNLTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQNSFLCRMINENHHQAAVGGGDVKAMVEMAPVLSMLTAAPAYYGEESSSTALQLTPPLHAVDAAAAAGFRLQPTQPNLQDPGCSSSSFHAAAAGHGLQL 259          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.774e-27
Identity = 68/173 (39.31%), Postives = 104/173 (60.12%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGP-LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 523
            M RG V+L+RIEN +  QVTF KRR GLLKKA ELS+LC+A++ +IIFS  GKLY+  ++ +M + +ERY+     A     +A     +  +QE + LK     LQ+  R + G      +  +EL +LER L++ +  IRS + Q M+  +  L+ KE +L  AN+ L+++
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYK----SASGEQANACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEK 169          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.774e-27
Identity = 68/173 (39.31%), Postives = 104/173 (60.12%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGP-LNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 523
            M RG V+L+RIEN +  QVTF KRR GLLKKA ELS+LC+A++ +IIFS  GKLY+  ++ +M + +ERY+     A     +A     +  +QE + LK     LQ+  R + G      +  +EL +LER L++ +  IRS + Q M+  +  L+ KE +L  AN+ L+++
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYK----SASGEQANACGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEK 169          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.434e-26
Identity = 71/176 (40.34%), Postives = 104/176 (59.09%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTL 535
            M R  +++K+I+N    QVTF+KRR GL KKA ELSVLCDA+VALIIFS+ GKL+++ SSSSM + LER    +    + +  + E L+L     Y +L           R + GEEL  LN +EL+ LER L+  L ++   +   ++  + +LQ K   L E N+ L+Q+ M +
Sbjct:    1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDY-SSSSMKQILERRDLHSKNLEKLDQPSLE-LQLVENSNYSRLSKEISEKSHRLRQMRGEELQGLNIEELQQLERSLETGLSRVIERKGDKIMREINQLQQKGMHLMEENEKLRQQVMEI 174          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 66/171 (38.60%), Postives = 105/171 (61.40%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSS-SMVKTLERYQKCNYGAPE-PNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 514
            MGRG +E+KRIEN    QVTF+KRR+GL+KK +ELSVLCDA++ LI+FS +GKL E+C+   SM + ++RY K     PE  N +   A      +E  ++K     LQ + +   G++L  +  +EL  LE+ LD SL ++R+ + + + + +  L+  E +L + N+ +
Sbjct:    1 MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDRYVKAKGILPEMENRAGPHADNDQVIKELTRMKEETLNLQLNLQRYKGDDLSTVRFEELTELEKLLDQSLNKVRARKLELLHEQMENLKRTEFMLEKENQEM 171          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25
Identity = 72/188 (38.30%), Postives = 109/188 (57.98%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS-SSSMVKTLERYQKCN----YGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAG 556
            MGRG +E+KRIEN    QVT++KRRNG++KKA E++VLCDA+V+LIIF N GK++E+CS S+++   L+ YQK +    + A   N+S           E  ++K   + +Q   R+L GE++  LN KEL  LE  L   L  I + ++    + L  ++  +Q+L E +K L+        AA  G
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQKTSGRRLWDAKHENLS----------NEIDRIKKENDNMQVKLRHLKGEDINSLNHKELMVLEEGLTNGLSSISAKQS----EILRMVRKNDQILEEEHKQLQYALHQKEMAAMGG 174          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MAD16_ORYSJ (MADS-box transcription factor 16 OS=Oryza sativa subsp. japonica GN=MADS16 PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 79/215 (36.74%), Postives = 118/215 (54.88%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTL-ERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLS-EANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQP 646
            MGRG +E+KRIEN    QVT++KRR G++KKA EL+VLCDA+VA+I+FS+ GK +EFCS S+ +K + +RYQ+          S       + Q+    LK     L+   R  +GE+L  L   EL  LE+ +D +LK++R  R  +++ T TE   K+   S EA +TL+Q        AF  +    G          +A+   + + P+QP
Sbjct:    1 MGRGKIEIKRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCSPSTDIKGIFDRYQQA------IGTSLWIEQYENMQRTLSHLKDINRNLRTEIRQRMGEDLDGLEFDELRGLEQNVDAALKEVRH-RKYHVITTQTETYKKKVKHSYEAYETLQQELGLREEPAFGFVDNTGGGWDGGAGAGAAADMFAFRVVPSQP 208          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: FBP1_PETHY (Floral homeotic protein FBP1 OS=Petunia hybrida GN=FBP1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.028e-24
Identity = 69/174 (39.66%), Postives = 105/174 (60.34%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQ---QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQ 520
            MGRG +E+KRIEN    QVT++KRRNG+LKKA E+SVLCDA V++IIF++ GK++EF SS+S+V  L++Y K         ++ R  L+   +    E  K+K   + +Q   R+L GE++  LN +EL  LE  L+  L  IR+ + + +     + Q  E+   + N  L+Q
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEF-SSTSLVDILDQYHK---------LTGRRLLDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMILEDALENGLTSIRNKQNEVLRMMRKKTQSMEEEQDQLNCQLRQ 164          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 70/180 (38.89%), Postives = 105/180 (58.33%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELS-SQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHA 544
            M R   E+KRIE+    QVTF+KRR GL KKA ELSVLCDA+VALI+FS+ GKL  F +SSSM + +++Y   N  +     + + +L+L+    +Y  L  +        R + GEEL  L+  EL+ LE+ L+  L ++  T+ Q  ++ ++ELQ K   L+E N  L+ +   +  A
Sbjct:    1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHF-ASSSMNEIIDKY---NTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQVSQISPA 176          
BLAST of DR403213 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.342e-24
Identity = 69/171 (40.35%), Postives = 101/171 (59.06%), Query Frame = 2
Query:    8 MGRGMVELKRIENKIXXQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQ 520
            MGRG +E+KRIEN    QVT++KRRNG+LKKA E+SVLCDA V++IIF++ GK++EF SS+S+V  L++Y K             +A   +   E  K+K   + +Q   R+L GE++  LN +EL  LE  LD  L  IR+ +   +     + Q  E+   + N  L+Q
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEF-SSTSLVDILDQYHKLT------GRRLWDAKHENLDNEINKVKKDNDNMQIELRHLKGEDITSLNHRELMMLEDALDNGLTSIRNKQNDLLRMMRKKTQSMEEEQDQLNWQLRQ 164          
The following BLAST results are available for this feature:
BLAST of DR403213 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
MAD29_ORYSJ3.774e-2732.84MADS-box transcription factor 29 OS=Oryza sativa s... [more]
MAD26_ORYSJ3.774e-2739.31MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD26_ORYSI3.774e-2739.31MADS-box transcription factor 26 OS=Oryza sativa s... [more]
JOIN_SOLLC1.434e-2640.34MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
DEF21_ANTMA2.446e-2638.60MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
MADS2_PETHY2.071e-2538.30Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
MAD16_ORYSJ6.025e-2536.74MADS-box transcription factor 16 OS=Oryza sativa s... [more]
FBP1_PETHY1.028e-2439.66Floral homeotic protein FBP1 OS=Petunia hybrida GN... [more]
MAD22_ORYSJ1.342e-2438.89MADS-box transcription factor 22 OS=Oryza sativa s... [more]
GLOB_TOBAC1.342e-2440.35Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244D08 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403213 ID=DR403213; Name=DR403213; organism=Citrus sinensis; type=EST; length=701bp
GGGGAAAATGGGAAGGGGTATGGTTGAGTTGAAGAGGATAGAGAACAAGA
TCAANNNNCAAGTGACCTTTGCAAAGAGAAGAAATGGCCTTTTGAAGAAA
GCTTATGAGCTTTCCGTTCTTTGTGATGCTGAGGTTGCTCTCATCATTTT
CTCCAATAGAGGAAAGCTGTACGAGTTTTGCAGTAGTTCAAGCATGGTCA
AAACGCTTGAGAGGTACCAGAAGTGCAACTATGGAGCACCAGAACCGAAT
GTGTCCGCAAGGGAGGCCCTGGAGCTAAGTAGCCAGCAAGAATATCTGAA
GCTTAAAGCACGATATGAAGCCCTACAGAGATCCCAAAGGAATCTCCTTG
GAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTTGAGTCACTTGAAAGG
CAGCTTGATATGTCATTGAAGCAGATCAGATCAACAAGAACTCAGTACAT
GCTGGATACCCTTACTGAACTGCAACATAAGGAACAGTTGCTGAGCGAAG
CAAATAAGACCCTCAAACAAAGGACGATGACGCTAAGGCACGCCGCTTTT
GCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAACACACTTCAATTGAA
TCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAACCAGCTCAACCTCAGG
GCGATAGCTTCTTTCACGCCTTGGAATGTGAACCCACATTGCAAATTGGA
T
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