DR403177
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_NITMU (30S ribosomal protein S11 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12 Identity = 38/108 (35.19%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 G+AH+ ASFN+T + +TD G +GG K R +S+P+AA +AA+ + +E G+ L ++++ +SA+RAL +G KI I DVTP+P Sbjct: 19 GIAHVHASFNNTIVTITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEQAGRAAQEYGVKNLEVRIKG--------PGPGRESAVRALNAAGFKITSISDVTPVP 117
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BUCCC (30S ribosomal protein S11 OS=Buchnera aphidicola subsp. Cinara cedri GN=rpsK PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12 Identity = 46/135 (34.07%), Postives = 71/135 (52.59%), Query Frame = 3 Query: 72 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 MS++K +PK+ + + DG +AHI ASFN+T + +TD G +GG + R +S+P+AA +AA+ + R K+ GI L + ++ +S +RAL SG +I I DVTPIP Sbjct: 1 MSKKKLNQPKKR---IKRQILDG-----IAHIHASFNNTIVTITDRKGNTLGWATSGGSGFRGSR-KSTPFAAQVAAEKCADRVKDYGIKNLEVMIKG--------PGPGRESTIRALNSSGFRITNIIDVTPIP 118
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_AZOSB (30S ribosomal protein S11 OS=Azoarcus sp. (strain BH72) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12 Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 G+AH+ ASFN+T I +TD G +GG K R +S+P+AA +AA+ + +E G+ L ++++ +SA+RAL GMKI I D+TPIP Sbjct: 19 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEAAGKVAQECGVKNLEVRIKG--------PGPGRESAVRALNALGMKISSITDITPIP 117
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_STRPZ (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11 Identity = 37/109 (33.94%), Postives = 63/109 (57.80%), Query Frame = 3 Query: 150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 FGVAHI A+FN+T + +TD+ G G + K R +S+P+AA +AA+ ++ +E G+ + + ++ +SA+RALA +G+++ I DVTP+P Sbjct: 16 FGVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_RALSO (30S ribosomal protein S11 OS=Ralstonia solanacearum GN=rpsK PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11 Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 G+AH+ ASFN+T I +TD G +GG K R +S+P+AA +AA+ + ++ GI L ++++ +SA+RAL G+KI IEDVTP+P Sbjct: 23 GIAHVHASFNNTIITITDRQGNALSWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAQDQGIKNLEVRIKG--------PGPGRESAVRALNNLGIKIQVIEDVTPVP 121
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_ERYLH (30S ribosomal protein S11 OS=Erythrobacter litoralis (strain HTCC2594) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11 Identity = 43/108 (39.81%), Postives = 57/108 (52.78%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 GVAH+ ASFN+T I +TD G G M K R +S+PYAA +AA D ++ E G+ L ++++ +SALRAL G I I DVTPIP Sbjct: 19 GVAHVNASFNNTMITITDAQGNAISWSSAGMMGFKGSR-KSTPYAAQVAADDAGRKAAEHGVRTLEVEVKG--------PGSGRESALRALQAVGFTITSIRDVTPIP 117
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_RHOSK (30S ribosomal protein S11 OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=rpsK PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11 Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 3 Query: 72 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 473 M+R KTR ++E + GVAH+ +SFN+T I ++D+ G G M K R +S+PYAA +AA+D +++ ++ G+ + ++++ +SALRALA +G+ I I DVTP+ Sbjct: 1 MARDKTRMKRKERKNIAA---------GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAAKKAQDHGMKTIEVEVQG--------PGSGRESALRALAAAGLNITSIRDVTPM 116
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_RHOS4 (30S ribosomal protein S11 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=rpsK PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11 Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 3 Query: 72 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 473 M+R KTR ++E + GVAH+ +SFN+T I ++D+ G G M K R +S+PYAA +AA+D +++ ++ G+ + ++++ +SALRALA +G+ I I DVTP+ Sbjct: 1 MARDKTRMKRKERKNIAA---------GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAAKKAQDHGMKTIEVEVQG--------PGSGRESALRALAAAGLNITSIRDVTPM 116
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_RHOS1 (30S ribosomal protein S11 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpsK PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11 Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 3 Query: 72 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 473 M+R KTR ++E + GVAH+ +SFN+T I ++D+ G G M K R +S+PYAA +AA+D +++ ++ G+ + ++++ +SALRALA +G+ I I DVTP+ Sbjct: 1 MARDKTRMKRKERKNIAA---------GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAAKKAQDHGMKTIEVEVQG--------PGSGRESALRALAAAGLNITSIRDVTPM 116
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_POLSQ (30S ribosomal protein S11 OS=Polynucleobacter sp. (strain QLW-P1DMWA-1) GN=rpsK PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11 Identity = 45/138 (32.61%), Postives = 72/138 (52.17%), Query Frame = 3 Query: 63 SAAMSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 SA+ + ++ R+ ++NV G+AH+ ASFN+T I +TD G +GG K R +S+P+AA +AA+ + E GI L ++++ +SA+RAL G+KI I+DVTP+P Sbjct: 6 SASAASQRARKKVKKNVA-----------DGIAHVHASFNNTIITITDRQGNALSWATSGGQGFKGSR-KSTPFAAQVAAEVAGKAAVECGIKNLEVQIKG--------PGPGRESAVRALNSLGIKITEIQDVTPVP 123 The following BLAST results are available for this feature:
BLAST of DR403177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 227
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Sequences
The
following sequences are available for this feature:
EST sequence >DR403177 ID=DR403177; Name=DR403177; organism=Citrus sinensis; type=EST; length=683bpback to top |