DR403177
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METEP (30S ribosomal protein S11 OS=Methylobacterium extorquens (strain PA1) GN=rpsK PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11 Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 3 Query: 147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 V GVAH+ ASFN+T I +TD G G M K R +S+PYAA +AA+D +++ E G+ L +++ +SALRAL +G + I DVT IP Sbjct: 17 VSGVAHVAASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAARKASEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTSIP 117
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METC4 (30S ribosomal protein S11 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rpsK PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11 Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 3 Query: 147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 V GVAH+ ASFN+T I +TD G G M K R +S+PYAA +AA+D +++ E G+ L +++ +SALRAL +G + I DVT IP Sbjct: 17 VSGVAHVAASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAARKASEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTSIP 117
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_MAGSA (30S ribosomal protein S11 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpsK PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11 Identity = 49/137 (35.77%), Postives = 72/137 (52.55%), Query Frame = 3 Query: 66 AAMSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 AA +R + RE K N+T G VAH+ A+FN+T I +TD G T+ + GM+ +S+PYAA +AA+D ++ E G+ L ++++ +SALRAL G +I I DVTPIP Sbjct: 5 AAAARPRRRERK--NITSG-----------VAHVNATFNNTMITITDAQGN-TISWSSAGMQGFKGSRKSTPYAAQVAAEDAGRKASEHGMRTLEVEVKG--------PGAGRESALRALQAVGFQITSIRDVTPIP 119
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_ALCBS (30S ribosomal protein S11 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rpsK PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11 Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 G+AH+ ASFN+T I +TD G +GG + R +S+P+AA +AA++ K+ G+ L ++++ +S++RAL G KI IEDVTPIP Sbjct: 22 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFRGSR-KSTPFAAQVAAENAGNAAKDYGLKNLEVRVKG--------PGPGRESSIRALNGCGYKITHIEDVTPIP 120
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_NOVAD (30S ribosomal protein S11 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rpsK PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11 Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 G+AH+ ASFN+T + +TD G G M K R +S+PYAA +AA D ++ E G+ L ++++ +SALRAL G I I DVTPIP Sbjct: 19 GIAHVNASFNNTMVTITDAQGNAISWSSAGMMGFKGSR-KSTPYAAQVAADDAGKKAAEHGVRTLEVEVKG--------PGSGRESALRALQAVGFTITAIRDVTPIP 117
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_NITHX (30S ribosomal protein S11 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpsK PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11 Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 GVAH+ +SFN+T I +TD G G M K R +S+PYAA +AA+DVS++ +E G+ L +++ +SALRAL +G + I DVT IP Sbjct: 20 GVAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTAIP 118
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_JANMA (30S ribosomal protein S11 OS=Janthinobacterium sp. (strain Marseille) GN=rpsK PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11 Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 G+AH+ ASFN+T I +TD G +GG K R +S+P+AA +AA+ + E GI L ++++ +SA+RAL G+KI +I+DVTP+P Sbjct: 24 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEAAGKVAIECGIKNLEVRIKG--------PGPGRESAVRALNNLGIKITQIQDVTPVP 122
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_CELJU (30S ribosomal protein S11 OS=Cellvibrio japonicus (strain Ueda107) GN=rpsK PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 GVAHI ASFN+T + +TD G +GG + R +S+P+AA +AA+ + KE G+ L ++++ +SA+RAL G KI I DVTPIP Sbjct: 21 GVAHIHASFNNTIVTITDRQGNALAWATSGGSGFRGSR-KSTPFAAQVAAERAGEAAKEYGLKNLDVEVKG--------PGPGRESAVRALNNVGYKITNITDVTPIP 119
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BRASO (30S ribosomal protein S11 OS=Bradyrhizobium sp. (strain ORS278) GN=rpsK PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11 Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 GVAH+ +SFN+T I +TD G G M K R +S+PYAA +AA+DVS++ +E G+ L +++ +SALRAL +G + I DVT IP Sbjct: 19 GVAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BRASB (30S ribosomal protein S11 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rpsK PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11 Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 GVAH+ +SFN+T I +TD G G M K R +S+PYAA +AA+DVS++ +E G+ L +++ +SALRAL +G + I DVT IP Sbjct: 19 GVAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117 The following BLAST results are available for this feature:
BLAST of DR403177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 227
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Sequences
The
following sequences are available for this feature:
EST sequence >DR403177 ID=DR403177; Name=DR403177; organism=Citrus sinensis; type=EST; length=683bpback to top |