DR403177

Overview
NameDR403177
Unique NameDR403177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METEP (30S ribosomal protein S11 OS=Methylobacterium extorquens (strain PA1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            V GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D +++  E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   17 VSGVAHVAASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAARKASEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTSIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METC4 (30S ribosomal protein S11 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            V GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D +++  E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   17 VSGVAHVAASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAARKASEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTSIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_MAGSA (30S ribosomal protein S11 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 49/137 (35.77%), Postives = 72/137 (52.55%), Query Frame = 3
Query:   66 AAMSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            AA +R + RE K  N+T G           VAH+ A+FN+T I +TD  G  T+   + GM+      +S+PYAA +AA+D  ++  E G+  L ++++              +SALRAL   G +I  I DVTPIP
Sbjct:    5 AAAARPRRRERK--NITSG-----------VAHVNATFNNTMITITDAQGN-TISWSSAGMQGFKGSRKSTPYAAQVAAEDAGRKASEHGMRTLEVEVKG--------PGAGRESALRALQAVGFQITSIRDVTPIP 119          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_ALCBS (30S ribosomal protein S11 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.617e-11
Identity = 39/108 (36.11%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            G+AH+ ASFN+T I +TD  G       +GG   +  R +S+P+AA +AA++     K+ G+  L ++++              +S++RAL   G KI  IEDVTPIP
Sbjct:   22 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFRGSR-KSTPFAAQVAAENAGNAAKDYGLKNLEVRVKG--------PGPGRESSIRALNGCGYKITHIEDVTPIP 120          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_NOVAD (30S ribosomal protein S11 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            G+AH+ ASFN+T + +TD  G        G M  K  R +S+PYAA +AA D  ++  E G+  L ++++              +SALRAL   G  I  I DVTPIP
Sbjct:   19 GIAHVNASFNNTMVTITDAQGNAISWSSAGMMGFKGSR-KSTPYAAQVAADDAGKKAAEHGVRTLEVEVKG--------PGSGRESALRALQAVGFTITAIRDVTPIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_NITHX (30S ribosomal protein S11 OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS++ +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   20 GVAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTAIP 118          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_JANMA (30S ribosomal protein S11 OS=Janthinobacterium sp. (strain Marseille) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E GI  L ++++              +SA+RAL   G+KI +I+DVTP+P
Sbjct:   24 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEAAGKVAIECGIKNLEVRIKG--------PGPGRESAVRALNNLGIKITQIQDVTPVP 122          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_CELJU (30S ribosomal protein S11 OS=Cellvibrio japonicus (strain Ueda107) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   +  KE G+  L ++++              +SA+RAL   G KI  I DVTPIP
Sbjct:   21 GVAHIHASFNNTIVTITDRQGNALAWATSGGSGFRGSR-KSTPFAAQVAAERAGEAAKEYGLKNLDVEVKG--------PGPGRESAVRALNNVGYKITNITDVTPIP 119          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BRASO (30S ribosomal protein S11 OS=Bradyrhizobium sp. (strain ORS278) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS++ +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GVAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BRASB (30S ribosomal protein S11 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS++ +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GVAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117          
The following BLAST results are available for this feature:
BLAST of DR403177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_METEP1.617e-1138.1830S ribosomal protein S11 OS=Methylobacterium exto... [more]
RS11_METC41.617e-1138.1830S ribosomal protein S11 OS=Methylobacterium chlo... [more]
RS11_MAGSA1.617e-1135.7730S ribosomal protein S11 OS=Magnetospirillum magn... [more]
RS11_ALCBS1.617e-1136.1130S ribosomal protein S11 OS=Alcanivorax borkumens... [more]
RS11_NOVAD2.112e-1137.9630S ribosomal protein S11 OS=Novosphingobium aroma... [more]
RS11_NITHX2.112e-1138.8930S ribosomal protein S11 OS=Nitrobacter hamburgen... [more]
RS11_JANMA2.112e-1137.0430S ribosomal protein S11 OS=Janthinobacterium sp.... [more]
RS11_CELJU2.112e-1137.9630S ribosomal protein S11 OS=Cellvibrio japonicus ... [more]
RS11_BRASO2.112e-1138.8930S ribosomal protein S11 OS=Bradyrhizobium sp. (s... [more]
RS11_BRASB2.112e-1138.8930S ribosomal protein S11 OS=Bradyrhizobium sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244B02 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403177 ID=DR403177; Name=DR403177; organism=Citrus sinensis; type=EST; length=683bp
GGGGAGTCTGACCAGCTGCTGCTTCCGTATTTCGAGGCTTTTGTGATCAA
CTCTCCGTGTCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAA
GGAGGAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTAT
TTGGCGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTG
ACTGACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAA
GGTTAAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAG
CACAAGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCAT
ATTAAGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGG
TGCTCAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCC
GCATAGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGT
GGTAGAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATAAC
GTTCAAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGAT
GCAAGAGTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTTGGAT
TCCTTTGTGTTACCCTTCCGGATCAATTAAGTT
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