DR403177

Overview
NameDR403177
Unique NameDR403177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6071 contig Csv1_Contig6071:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BRAJA (30S ribosomal protein S11 OS=Bradyrhizobium japonicum GN=rpsK PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS++ +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GVAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_RHOPB (30S ribosomal protein S11 OS=Rhodopseudomonas palustris (strain BisB18) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            G+AH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS++ +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_RHOP5 (30S ribosomal protein S11 OS=Rhodopseudomonas palustris (strain BisA53) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            G+AH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS++ +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_RHOP2 (30S ribosomal protein S11 OS=Rhodopseudomonas palustris (strain HaA2) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            G+AH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DV+++ +E G+  L +++               +SALRAL  SG  +  I DVT IP
Sbjct:   19 GIAHVNSSFNNTTITITDAQGNAIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVAKKAQEHGMRTLEVEVAG--------PGSGRESALRALQASGFTVTSIRDVTTIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_NITWN (30S ribosomal protein S11 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            G+AH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DVS++ +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   20 GIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTAIP 118          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METSB (30S ribosomal protein S11 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            V GVAH+ ++FN+T I +TD  G        G M  K  R +S+PYAA +AA+D +++  E G+  L +++               +SALRAL  +G  +  I DVTPIP
Sbjct:   17 VSGVAHVNSTFNNTMITITDAQGNTISWSSAGTMGFKGSR-KSTPYAAQMAAEDCARKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTPIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METFK (30S ribosomal protein S11 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +  +E G+  L ++++              +SA+RAL   G KI  I DVTP+P
Sbjct:   19 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEAAGKAAQECGVKNLEVRIKG--------PGPGRESAVRALNAVGFKITSISDVTPVP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_SPHAL (30S ribosomal protein S11 OS=Sphingopyxis alaskensis GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAH+ A+FN+T I +TD  G        G M  K  R +S+PYAA + A+D  ++  E G+  L ++++              +SALRAL   G  I  I DVTPIP
Sbjct:   19 GVAHVNATFNNTMITITDAQGNAIAWSSAGMMGFKGSR-KSTPYAAQVCAEDAGKKAAEHGVRTLEVEVKG--------PGAGRESALRALQAVGFHITSIRDVTPIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_ROSDO (30S ribosomal protein S11 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 45/134 (33.58%), Postives = 70/134 (52.24%), Query Frame = 3
Query:   72 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 473
            M+R K R  K+ +  +           GVAH+ +SFN+T I ++D+ G        G M  K  R +S+PYAA +AA+D  ++ +E G+  L ++++              +SALRALA +G  I  I DVTP+
Sbjct:    1 MARDKVRVKKKASKNIAA---------GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAGRKAQEHGVKTLEVEVQG--------PGSGRESALRALAAAGFNITSIRDVTPM 116          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_RHILO (30S ribosomal protein S11 OS=Rhizobium loti GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAH+ ++FN+T I +TD  G        G    K  R +S+P+AA +AA+DV+++ +E G+  L +++               +SALRAL  +G  I  I DVTPIP
Sbjct:   19 GVAHVNSTFNNTMITITDAQGNSIAWSSAGAQGFKGSR-KSTPFAAQMAAEDVAKKAQEHGMRMLEVEV--------CGPGSGRESALRALQAAGFTITSIRDVTPIP 117          
The following BLAST results are available for this feature:
BLAST of DR403177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_BRAJA2.112e-1138.8930S ribosomal protein S11 OS=Bradyrhizobium japoni... [more]
RS11_RHOPB2.758e-1137.9630S ribosomal protein S11 OS=Rhodopseudomonas palu... [more]
RS11_RHOP52.758e-1137.9630S ribosomal protein S11 OS=Rhodopseudomonas palu... [more]
RS11_RHOP22.758e-1137.9630S ribosomal protein S11 OS=Rhodopseudomonas palu... [more]
RS11_NITWN2.758e-1137.9630S ribosomal protein S11 OS=Nitrobacter winograds... [more]
RS11_METSB2.758e-1137.2730S ribosomal protein S11 OS=Methylocella silvestr... [more]
RS11_METFK2.758e-1136.1130S ribosomal protein S11 OS=Methylobacillus flage... [more]
RS11_SPHAL3.602e-1137.9630S ribosomal protein S11 OS=Sphingopyxis alaskens... [more]
RS11_ROSDO3.602e-1133.5830S ribosomal protein S11 OS=Roseobacter denitrifi... [more]
RS11_RHILO3.602e-1137.0430S ribosomal protein S11 OS=Rhizobium loti GN=rps... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244B02 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403177 ID=DR403177; Name=DR403177; organism=Citrus sinensis; type=EST; length=683bp
GGGGAGTCTGACCAGCTGCTGCTTCCGTATTTCGAGGCTTTTGTGATCAA
CTCTCCGTGTCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAA
GGAGGAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTAT
TTGGCGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTG
ACTGACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAA
GGTTAAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAG
CACAAGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCAT
ATTAAGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGG
TGCTCAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCC
GCATAGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGT
GGTAGAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATAAC
GTTCAAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGAT
GCAAGAGTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTTGGAT
TCCTTTGTGTTACCCTTCCGGATCAATTAAGTT
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