DR403177
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BRAJA (30S ribosomal protein S11 OS=Bradyrhizobium japonicum GN=rpsK PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11 Identity = 42/108 (38.89%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 GVAH+ +SFN+T I +TD G G M K R +S+PYAA +AA+DVS++ +E G+ L +++ +SALRAL +G + I DVT IP Sbjct: 19 GVAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_RHOPB (30S ribosomal protein S11 OS=Rhodopseudomonas palustris (strain BisB18) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11 Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 G+AH+ +SFN+T I +TD G G M K R +S+PYAA +AA+DVS++ +E G+ L +++ +SALRAL +G + I DVT IP Sbjct: 19 GIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_RHOP5 (30S ribosomal protein S11 OS=Rhodopseudomonas palustris (strain BisA53) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11 Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 G+AH+ +SFN+T I +TD G G M K R +S+PYAA +AA+DVS++ +E G+ L +++ +SALRAL +G + I DVT IP Sbjct: 19 GIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_RHOP2 (30S ribosomal protein S11 OS=Rhodopseudomonas palustris (strain HaA2) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11 Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 G+AH+ +SFN+T I +TD G G M K R +S+PYAA +AA+DV+++ +E G+ L +++ +SALRAL SG + I DVT IP Sbjct: 19 GIAHVNSSFNNTTITITDAQGNAIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVAKKAQEHGMRTLEVEVAG--------PGSGRESALRALQASGFTVTSIRDVTTIP 117
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_NITWN (30S ribosomal protein S11 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11 Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 G+AH+ +SFN+T I +TD G G M K R +S+PYAA +AA+DVS++ +E G+ L +++ +SALRAL +G + I DVT IP Sbjct: 20 GIAHVNSSFNNTTITITDAQGNTIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVSKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTAIP 118
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METSB (30S ribosomal protein S11 OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11 Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 3 Query: 147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 V GVAH+ ++FN+T I +TD G G M K R +S+PYAA +AA+D +++ E G+ L +++ +SALRAL +G + I DVTPIP Sbjct: 17 VSGVAHVNSTFNNTMITITDAQGNTISWSSAGTMGFKGSR-KSTPYAAQMAAEDCARKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTPIP 117
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METFK (30S ribosomal protein S11 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11 Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 G+AH+ ASFN+T I +TD G +GG K R +S+P+AA +AA+ + +E G+ L ++++ +SA+RAL G KI I DVTP+P Sbjct: 19 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEAAGKAAQECGVKNLEVRIKG--------PGPGRESAVRALNAVGFKITSISDVTPVP 117
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_SPHAL (30S ribosomal protein S11 OS=Sphingopyxis alaskensis GN=rpsK PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11 Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 GVAH+ A+FN+T I +TD G G M K R +S+PYAA + A+D ++ E G+ L ++++ +SALRAL G I I DVTPIP Sbjct: 19 GVAHVNATFNNTMITITDAQGNAIAWSSAGMMGFKGSR-KSTPYAAQVCAEDAGKKAAEHGVRTLEVEVKG--------PGAGRESALRALQAVGFHITSIRDVTPIP 117
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_ROSDO (30S ribosomal protein S11 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11 Identity = 45/134 (33.58%), Postives = 70/134 (52.24%), Query Frame = 3 Query: 72 MSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPI 473 M+R K R K+ + + GVAH+ +SFN+T I ++D+ G G M K R +S+PYAA +AA+D ++ +E G+ L ++++ +SALRALA +G I I DVTP+ Sbjct: 1 MARDKVRVKKKASKNIAA---------GVAHVNSSFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQMAAEDAGRKAQEHGVKTLEVEVQG--------PGSGRESALRALAAAGFNITSIRDVTPM 116
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_RHILO (30S ribosomal protein S11 OS=Rhizobium loti GN=rpsK PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11 Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 GVAH+ ++FN+T I +TD G G K R +S+P+AA +AA+DV+++ +E G+ L +++ +SALRAL +G I I DVTPIP Sbjct: 19 GVAHVNSTFNNTMITITDAQGNSIAWSSAGAQGFKGSR-KSTPFAAQMAAEDVAKKAQEHGMRMLEVEV--------CGPGSGRESALRALQAAGFTITSIRDVTPIP 117 The following BLAST results are available for this feature:
BLAST of DR403177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 227
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Sequences
The
following sequences are available for this feature:
EST sequence >DR403177 ID=DR403177; Name=DR403177; organism=Citrus sinensis; type=EST; length=683bpback to top |