DR403177

Overview
NameDR403177
Unique NameDR403177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_POLNS (30S ribosomal protein S11 OS=Polynucleobacter necessarius (strain STIR1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 45/138 (32.61%), Postives = 71/138 (51.45%), Query Frame = 3
Query:   63 SAAMSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            SAA + ++ R+  ++NV             G+AH+  SFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E GI +L  +++              +SA+RAL   G+KI  I+DVTP+P
Sbjct:    6 SAAAASQRARKKVKKNVA-----------DGIAHVHTSFNNTIITITDRQGNALSWATSGGQGFKGSR-KSTPFAAQVAAEVAGKTAIECGIKSLEAQIKG--------PGPGRESAVRALNSLGIKITEIQDVTPVP 123          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METRJ (30S ribosomal protein S11 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 42/110 (38.18%), Postives = 58/110 (52.73%), Query Frame = 3
Query:  147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            V GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D  ++  E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   17 VSGVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAGRKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTSIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METPB (30S ribosomal protein S11 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 42/110 (38.18%), Postives = 58/110 (52.73%), Query Frame = 3
Query:  147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            V GVAH+ ASFN+T I +TD  G        G M  K  R +S+PYAA +AA+D  ++  E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   17 VSGVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAGRKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTSIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_HERAR (30S ribosomal protein S11 OS=Herminiimonas arsenicoxydans GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11
Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            G+AHI ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E GI  L ++++              +S++RAL   G+KI +I+DVTP+P
Sbjct:   24 GIAHIHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEAAGKVAIECGIKNLEVRIKG--------PGPGRESSVRALNNLGIKITQIQDVTPVP 122          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_THIDA (30S ribosomal protein S11 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            G+AHI ASFN+T + +TD  G        GG   K  R +S+P+AA +AA++  +  +E G+  L ++++              +S +RAL   G KI  I DVTPIP
Sbjct:   20 GIAHIHASFNNTIVTITDRQGNALSWATAGGAGFKGSR-KSTPFAAQVAAENAGKMAQEYGVKNLEVRIKG--------PGPGRESTVRALNALGFKIVAISDVTPIP 118          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_TERTT (30S ribosomal protein S11 OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 3
Query:  147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            V G+AHI ASFN+T + +TD  G        GG   +  R +S+P+AA +AA+   Q  +E G+  L ++++              +SA+RAL   G KI  I DVTPIP
Sbjct:   18 VDGIAHIHASFNNTIVTITDRQGNTLSWATAGGSGFRGSR-KSTPFAAQVAAERAGQAAQEYGLKNLDVEVKG--------PGPGRESAVRALNNVGYKITNITDVTPIP 118          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_NITEU (30S ribosomal protein S11 OS=Nitrosomonas europaea GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            V GVAHI ASFN+T + ++D  G       +GG+  K  R +S+P+AA +AA+   +   E G+  L ++++               SA+RAL  +G KI  I DVTPIP
Sbjct:   17 VEGVAHIHASFNNTIVTISDRQGNALSWATSGGVGFKGSR-KSTPFAAQVAAEHAGRAALEYGVKNLEVRVKG--------PGPGRDSAVRALNATGFKITSITDVTPIP 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_MYXXD (30S ribosomal protein S11 OS=Myxococcus xanthus (strain DK 1622) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 48/146 (32.88%), Postives = 77/146 (52.74%), Query Frame = 3
Query:   45 DQLSVSSAAMSRRKTREPKEENVTLGPAVRDGEH--VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            D+++ S+AA +  +   P  +      + R G+   + GV HI ++FN+T I +TD+SG        G    K  R +S+P+AA +AA D + +  E G+  + + ++              +SALRALA +G+KI  I DVTPIP
Sbjct:    3 DEINTSAAASTGAEGEAPAAKK-----SKRKGKKNILNGVVHIQSTFNNTIITITDVSGNVISWSSAGARGFKGSR-KSTPFAAQVAAGDAAAKAMEHGLKNVSVFVKGPGAGR--------ESALRALAAAGLKINLIRDVTPIP 134          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BURVG (30S ribosomal protein S11 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BURTA (30S ribosomal protein S11 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 3
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121          
The following BLAST results are available for this feature:
BLAST of DR403177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_POLNS3.602e-1132.6130S ribosomal protein S11 OS=Polynucleobacter nece... [more]
RS11_METRJ3.602e-1138.1830S ribosomal protein S11 OS=Methylobacterium radi... [more]
RS11_METPB3.602e-1138.1830S ribosomal protein S11 OS=Methylobacterium popu... [more]
RS11_HERAR3.602e-1137.0430S ribosomal protein S11 OS=Herminiimonas arsenic... [more]
RS11_THIDA4.704e-1136.1130S ribosomal protein S11 OS=Thiobacillus denitrif... [more]
RS11_TERTT4.704e-1137.2730S ribosomal protein S11 OS=Teredinibacter turner... [more]
RS11_NITEU4.704e-1137.2730S ribosomal protein S11 OS=Nitrosomonas europaea... [more]
RS11_MYXXD4.704e-1132.8830S ribosomal protein S11 OS=Myxococcus xanthus (s... [more]
RS11_BURVG4.704e-1137.0430S ribosomal protein S11 OS=Burkholderia vietnami... [more]
RS11_BURTA4.704e-1137.0430S ribosomal protein S11 OS=Burkholderia thailand... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244B02 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403177 ID=DR403177; Name=DR403177; organism=Citrus sinensis; type=EST; length=683bp
GGGGAGTCTGACCAGCTGCTGCTTCCGTATTTCGAGGCTTTTGTGATCAA
CTCTCCGTGTCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAA
GGAGGAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTAT
TTGGCGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTG
ACTGACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAA
GGTTAAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAG
CACAAGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCAT
ATTAAGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGG
TGCTCAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCC
GCATAGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGT
GGTAGAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATAAC
GTTCAAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGAT
GCAAGAGTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTTGGAT
TCCTTTGTGTTACCCTTCCGGATCAATTAAGTT
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