DR403177
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_POLNS (30S ribosomal protein S11 OS=Polynucleobacter necessarius (strain STIR1) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11 Identity = 45/138 (32.61%), Postives = 71/138 (51.45%), Query Frame = 3 Query: 63 SAAMSRRKTREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 SAA + ++ R+ ++NV G+AH+ SFN+T I +TD G +GG K R +S+P+AA +AA+ + E GI +L +++ +SA+RAL G+KI I+DVTP+P Sbjct: 6 SAAAASQRARKKVKKNVA-----------DGIAHVHTSFNNTIITITDRQGNALSWATSGGQGFKGSR-KSTPFAAQVAAEVAGKTAIECGIKSLEAQIKG--------PGPGRESAVRALNSLGIKITEIQDVTPVP 123
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METRJ (30S ribosomal protein S11 OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11 Identity = 42/110 (38.18%), Postives = 58/110 (52.73%), Query Frame = 3 Query: 147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 V GVAH+ ASFN+T I +TD G G M K R +S+PYAA +AA+D ++ E G+ L +++ +SALRAL +G + I DVT IP Sbjct: 17 VSGVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAGRKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTSIP 117
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METPB (30S ribosomal protein S11 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11 Identity = 42/110 (38.18%), Postives = 58/110 (52.73%), Query Frame = 3 Query: 147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 V GVAH+ ASFN+T I +TD G G M K R +S+PYAA +AA+D ++ E G+ L +++ +SALRAL +G + I DVT IP Sbjct: 17 VSGVAHVNASFNNTMITITDAQGNTISWSSAGAMGFKGSR-KSTPYAAQVAAEDAGRKAAEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTSIP 117
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_HERAR (30S ribosomal protein S11 OS=Herminiimonas arsenicoxydans GN=rpsK PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.602e-11 Identity = 40/108 (37.04%), Postives = 61/108 (56.48%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 G+AHI ASFN+T I +TD G +GG K R +S+P+AA +AA+ + E GI L ++++ +S++RAL G+KI +I+DVTP+P Sbjct: 24 GIAHIHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAEAAGKVAIECGIKNLEVRIKG--------PGPGRESSVRALNNLGIKITQIQDVTPVP 122
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_THIDA (30S ribosomal protein S11 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11 Identity = 39/108 (36.11%), Postives = 58/108 (53.70%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 G+AHI ASFN+T + +TD G GG K R +S+P+AA +AA++ + +E G+ L ++++ +S +RAL G KI I DVTPIP Sbjct: 20 GIAHIHASFNNTIVTITDRQGNALSWATAGGAGFKGSR-KSTPFAAQVAAENAGKMAQEYGVKNLEVRIKG--------PGPGRESTVRALNALGFKIVAISDVTPIP 118
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_TERTT (30S ribosomal protein S11 OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11 Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 3 Query: 147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 V G+AHI ASFN+T + +TD G GG + R +S+P+AA +AA+ Q +E G+ L ++++ +SA+RAL G KI I DVTPIP Sbjct: 18 VDGIAHIHASFNNTIVTITDRQGNTLSWATAGGSGFRGSR-KSTPFAAQVAAERAGQAAQEYGLKNLDVEVKG--------PGPGRESAVRALNNVGYKITNITDVTPIP 118
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_NITEU (30S ribosomal protein S11 OS=Nitrosomonas europaea GN=rpsK PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11 Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 3 Query: 147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 V GVAHI ASFN+T + ++D G +GG+ K R +S+P+AA +AA+ + E G+ L ++++ SA+RAL +G KI I DVTPIP Sbjct: 17 VEGVAHIHASFNNTIVTISDRQGNALSWATSGGVGFKGSR-KSTPFAAQVAAEHAGRAALEYGVKNLEVRVKG--------PGPGRDSAVRALNATGFKITSITDVTPIP 117
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_MYXXD (30S ribosomal protein S11 OS=Myxococcus xanthus (strain DK 1622) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11 Identity = 48/146 (32.88%), Postives = 77/146 (52.74%), Query Frame = 3 Query: 45 DQLSVSSAAMSRRKTREPKEENVTLGPAVRDGEH--VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 D+++ S+AA + + P + + R G+ + GV HI ++FN+T I +TD+SG G K R +S+P+AA +AA D + + E G+ + + ++ +SALRALA +G+KI I DVTPIP Sbjct: 3 DEINTSAAASTGAEGEAPAAKK-----SKRKGKKNILNGVVHIQSTFNNTIITITDVSGNVISWSSAGARGFKGSR-KSTPFAAQVAAGDAAAKAMEHGLKNVSVFVKGPGAGR--------ESALRALAAAGLKINLIRDVTPIP 134
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BURVG (30S ribosomal protein S11 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11 Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 GV H+ ASFN+T I +TD G +GG K R +S+P+AA +AA+ + E G+ L ++++ +SA+RAL G+KI I DVTPIP Sbjct: 23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BURTA (30S ribosomal protein S11 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11 Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 3 Query: 153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476 GV H+ ASFN+T I +TD G +GG K R +S+P+AA +AA+ + E G+ L ++++ +SA+RAL G+KI I DVTPIP Sbjct: 23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121 The following BLAST results are available for this feature:
BLAST of DR403177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 227
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Sequences
The
following sequences are available for this feature:
EST sequence >DR403177 ID=DR403177; Name=DR403177; organism=Citrus sinensis; type=EST; length=683bpback to top |