DR403177

Overview
NameDR403177
Unique NameDR403177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6071 contig Csv1_Contig6071:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BURCM (30S ribosomal protein S11 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BURCJ (30S ribosomal protein S11 OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BURCH (30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain HI2424) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BURCC (30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain MC0-3) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BURCA (30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain AU 1054) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BURA4 (30S ribosomal protein S11 OS=Burkholderia ambifaria (strain MC40-6) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GV H+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E G+  L ++++              +SA+RAL   G+KI  I DVTPIP
Sbjct:   23 GVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGSR-KSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG--------PGPGRESAVRALHGLGIKITAISDVTPIP 121
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BORPE (30S ribosomal protein S11 OS=Bordetella pertussis GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E GI  L ++++              +S++RAL   G+KI  I D+TP+P
Sbjct:   23 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKG--------PGPGRESSVRALNALGIKISSIADITPVP 121
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BORPA (30S ribosomal protein S11 OS=Bordetella parapertussis GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E GI  L ++++              +S++RAL   G+KI  I D+TP+P
Sbjct:   23 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKG--------PGPGRESSVRALNALGIKISSIADITPVP 121
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BORBR (30S ribosomal protein S11 OS=Bordetella bronchiseptica GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E GI  L ++++              +S++RAL   G+KI  I D+TP+P
Sbjct:   23 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKG--------PGPGRESSVRALNALGIKISSIADITPVP 121
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BORA1 (30S ribosomal protein S11 OS=Bordetella avium (strain 197N) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            G+AH+ ASFN+T I +TD  G       +GG   K  R +S+P+AA +AA+   +   E GI  L ++++              +S++RAL   G+KI  I D+TP+P
Sbjct:   23 GIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSR-KSTPFAAQVAAETAGRVAMEYGIKTLEVRIKG--------PGPGRESSVRALNALGIKISSIADITPVP 121
The following BLAST results are available for this feature:
BLAST of DR403177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_BURCM4.704e-1137.0430S ribosomal protein S11 OS=Burkholderia ambifari... [more]
RS11_BURCJ4.704e-1137.0430S ribosomal protein S11 OS=Burkholderia cepacia ... [more]
RS11_BURCH4.704e-1137.0430S ribosomal protein S11 OS=Burkholderia cenocepa... [more]
RS11_BURCC4.704e-1137.0430S ribosomal protein S11 OS=Burkholderia cenocepa... [more]
RS11_BURCA4.704e-1137.0430S ribosomal protein S11 OS=Burkholderia cenocepa... [more]
RS11_BURA44.704e-1137.0430S ribosomal protein S11 OS=Burkholderia ambifari... [more]
RS11_BORPE4.704e-1135.1930S ribosomal protein S11 OS=Bordetella pertussis ... [more]
RS11_BORPA4.704e-1135.1930S ribosomal protein S11 OS=Bordetella parapertus... [more]
RS11_BORBR4.704e-1135.1930S ribosomal protein S11 OS=Bordetella bronchisep... [more]
RS11_BORA14.704e-1135.1930S ribosomal protein S11 OS=Bordetella avium (str... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244B02 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403177 ID=DR403177; Name=DR403177; organism=Citrus sinensis; type=EST; length=683bp
GGGGAGTCTGACCAGCTGCTGCTTCCGTATTTCGAGGCTTTTGTGATCAA
CTCTCCGTGTCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAA
GGAGGAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTAT
TTGGCGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTG
ACTGACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAA
GGTTAAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAG
CACAAGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCAT
ATTAAGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGG
TGCTCAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCC
GCATAGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGT
GGTAGAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATAAC
GTTCAAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGAT
GCAAGAGTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTTGGAT
TCCTTTGTGTTACCCTTCCGGATCAATTAAGTT
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