DR403177

Overview
NameDR403177
Unique NameDR403177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6071 contig Csv1_Contig6071:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_BEII9 (30S ribosomal protein S11 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 3 
Query:  147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            V GVAH+ ++FN+T I +TD  G        G M  K  R +S+PYAA +AA+D +++  E G+  L +++               +SALRAL  +G  +  I DVTPIP
Sbjct:   17 VSGVAHVNSTFNNTMITITDAQGNTISWSSAGMMGFKGSR-KSTPYAAQMAAEDCARKAVEHGMRTLEVEVSG--------PGSGRESALRALQAAGFTVTSIRDVTPIP 117
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_ACICJ (30S ribosomal protein S11 OS=Acidiphilium cryptum (strain JF-5) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.704e-11
Identity = 40/108 (37.04%), Postives = 57/108 (52.78%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAH+ ASFN+T + ++D  G        G    K  R +S+PYAA +AA+D  ++ +E G+  L I++               +SALRAL   G  I  I D+TPIP
Sbjct:   20 GVAHVLASFNNTMVTISDAQGNAISWSSAGSQGFKGSR-KSTPYAAQVAAEDAGRKAREHGMETLEIEVSG--------PGAGRESALRALQTIGFSITAIRDLTPIP 118
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_STRU0 (30S ribosomal protein S11 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_STRS7 (30S ribosomal protein S11 OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_STRPM (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M28 GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_STRPG (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_STRPF (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_STRPD (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M2 (strain MGAS10270) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_STRPC (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M12 (strain MGAS9429) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_STRPB (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M12 (strain MGAS2096) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
The following BLAST results are available for this feature:
BLAST of DR403177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_BEII94.704e-1137.2730S ribosomal protein S11 OS=Beijerinckia indica s... [more]
RS11_ACICJ4.704e-1137.0430S ribosomal protein S11 OS=Acidiphilium cryptum ... [more]
RS11_STRU06.144e-1133.3330S ribosomal protein S11 OS=Streptococcus uberis ... [more]
RS11_STRS76.144e-1133.3330S ribosomal protein S11 OS=Streptococcus equi su... [more]
RS11_STRPM6.144e-1133.3330S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STRPG6.144e-1133.3330S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STRPF6.144e-1133.3330S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STRPD6.144e-1133.3330S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STRPC6.144e-1133.3330S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STRPB6.144e-1133.3330S ribosomal protein S11 OS=Streptococcus pyogene... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244B02 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403177 ID=DR403177; Name=DR403177; organism=Citrus sinensis; type=EST; length=683bp
GGGGAGTCTGACCAGCTGCTGCTTCCGTATTTCGAGGCTTTTGTGATCAA
CTCTCCGTGTCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAA
GGAGGAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTAT
TTGGCGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTG
ACTGACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAA
GGTTAAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAG
CACAAGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCAT
ATTAAGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGG
TGCTCAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCC
GCATAGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGT
GGTAGAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATAAC
GTTCAAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGAT
GCAAGAGTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTTGGAT
TCCTTTGTGTTACCCTTCCGGATCAATTAAGTT
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