DR403177

Overview
NameDR403177
Unique NameDR403177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6071 contig Csv1_Contig6071:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_STRP8 (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M18 GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_STRP6 (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M6 GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_STRP3 (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M3 GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_STRP1 (30S ribosomal protein S11 OS=Streptococcus pyogenes serotype M1 GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_STREM (30S ribosomal protein S11 OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_STRE4 (30S ribosomal protein S11 OS=Streptococcus equi subsp. equi (strain 4047) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_STRA5 (30S ribosomal protein S11 OS=Streptococcus agalactiae serotype V GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_STRA3 (30S ribosomal protein S11 OS=Streptococcus agalactiae serotype III GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_STRA1 (30S ribosomal protein S11 OS=Streptococcus agalactiae serotype Ia GN=rpsK PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 36/108 (33.33%), Postives = 62/108 (57.41%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAHI A+FN+T + +TD+ G        G +  K  R +S+P+AA +AA+  ++  +E G+  + + ++              +SA+RALA +G+++  I DVTP+P
Sbjct:   17 GVAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEHGLKTVEVTVKG--------PGSGRESAIRALAAAGLEVTAIRDVTPVP 115
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_SINMW (30S ribosomal protein S11 OS=Sinorhizobium medicae (strain WSM419) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAH+ +SFN+T I +TD  G        G    K  R +S+P+AA +AA+D +++ +E G+ +L +++               +SALRAL  +G  I  I DVTPIP
Sbjct:   19 GVAHVNSSFNNTMITITDAQGNAIAWSSAGAKGFKGSR-KSTPFAAQIAAEDCAKKAQEHGMKSLEVEV--------CGPGSGRESALRALQAAGFMITSIRDVTPIP 117
The following BLAST results are available for this feature:
BLAST of DR403177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_STRP86.144e-1133.3330S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STRP66.144e-1133.3330S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STRP36.144e-1133.3330S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STRP16.144e-1133.3330S ribosomal protein S11 OS=Streptococcus pyogene... [more]
RS11_STREM6.144e-1133.3330S ribosomal protein S11 OS=Streptococcus equi su... [more]
RS11_STRE46.144e-1133.3330S ribosomal protein S11 OS=Streptococcus equi su... [more]
RS11_STRA56.144e-1133.3330S ribosomal protein S11 OS=Streptococcus agalact... [more]
RS11_STRA36.144e-1133.3330S ribosomal protein S11 OS=Streptococcus agalact... [more]
RS11_STRA16.144e-1133.3330S ribosomal protein S11 OS=Streptococcus agalact... [more]
RS11_SINMW6.144e-1137.0430S ribosomal protein S11 OS=Sinorhizobium medicae... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244B02 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403177 ID=DR403177; Name=DR403177; organism=Citrus sinensis; type=EST; length=683bp
GGGGAGTCTGACCAGCTGCTGCTTCCGTATTTCGAGGCTTTTGTGATCAA
CTCTCCGTGTCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAA
GGAGGAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTAT
TTGGCGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTG
ACTGACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAA
GGTTAAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAG
CACAAGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCAT
ATTAAGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGG
TGCTCAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCC
GCATAGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGT
GGTAGAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATAAC
GTTCAAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGAT
GCAAGAGTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTTGGAT
TCCTTTGTGTTACCCTTCCGGATCAATTAAGTT
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