DR403177

Overview
NameDR403177
Unique NameDR403177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_RHOPT (30S ribosomal protein S11 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            G+AH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DV+++ +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GIAHVNSSFNNTTITITDAQGNAIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVAKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_RHOPS (30S ribosomal protein S11 OS=Rhodopseudomonas palustris (strain BisB5) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            G+AH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DV+++ +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GIAHVNSSFNNTTITITDAQGNAIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVAKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_RHOPA (30S ribosomal protein S11 OS=Rhodopseudomonas palustris GN=rpsK PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            G+AH+ +SFN+T I +TD  G        G M  K  R +S+PYAA +AA+DV+++ +E G+  L +++               +SALRAL  +G  +  I DVT IP
Sbjct:   19 GIAHVNSSFNNTTITITDAQGNAIAWSSAGTMGFKGSR-KSTPYAAQVAAEDVAKKAQEHGMRTLEVEVAG--------PGSGRESALRALQAAGFTVTSIRDVTTIP 117
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_RHISN (30S ribosomal protein S11 OS=Rhizobium sp. (strain NGR234) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAH+ +SFN+T I +TD  G        G    K  R +S+P+AA +AA+D +++ +E G+ +L +++               +SALRAL  +G  I  I DVTPIP
Sbjct:   19 GVAHVNSSFNNTMITITDAQGNAIAWSSAGAKGFKGSR-KSTPFAAQIAAEDCAKKAQEHGMKSLEVEV--------CGPGSGRESALRALQAAGFMITSIRDVTPIP 117
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_RHIME (30S ribosomal protein S11 OS=Rhizobium meliloti GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 3 
Query:  153 GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            GVAH+ +SFN+T I +TD  G        G    K  R +S+P+AA +AA+D +++ +E G+ +L +++               +SALRAL  +G  I  I DVTPIP
Sbjct:   19 GVAHVNSSFNNTMITITDAQGNAIAWSSAGAKGFKGSR-KSTPFAAQIAAEDCAKKAQEHGMKSLEVEV--------CGPGSGRESALRALQAAGFMITSIRDVTPIP 117
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_PSEU5 (30S ribosomal protein S11 OS=Pseudomonas stutzeri (strain A1501) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 3 
Query:  147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            V G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   Q   E G+  L + ++              +SA+RAL   G KI  I DVTPIP
Sbjct:   17 VDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQIAAERAGQAALEYGLKNLDVNVKG--------PGPGRESAVRALNACGYKIASITDVTPIP 117
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_PSEPW (30S ribosomal protein S11 OS=Pseudomonas putida (strain W619) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 3 
Query:  147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            V G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   Q   E G+  L + ++              +SA+RAL   G KI  I DVTPIP
Sbjct:   17 VDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQIAAERAGQAALEYGLKNLDVNVKG--------PGPGRESAVRALNSCGYKIASITDVTPIP 117
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_PSEPK (30S ribosomal protein S11 OS=Pseudomonas putida (strain KT2440) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 3 
Query:  147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            V G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   Q   E G+  L + ++              +SA+RAL   G KI  I DVTPIP
Sbjct:   17 VDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQIAAERAGQAALEYGLKNLDVNVKG--------PGPGRESAVRALNSCGYKIASITDVTPIP 117
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_PSEPG (30S ribosomal protein S11 OS=Pseudomonas putida (strain GB-1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 3 
Query:  147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            V G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   Q   E G+  L + ++              +SA+RAL   G KI  I DVTPIP
Sbjct:   17 VDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQIAAERAGQAALEYGLKNLDVNVKG--------PGPGRESAVRALNSCGYKIASITDVTPIP 117
[Close]
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_PSEP1 (30S ribosomal protein S11 OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=rpsK PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = 3 
Query:  147 VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIP 476
            V G+AHI ASFN+T + +TD  G       +GG   +  R +S+P+AA +AA+   Q   E G+  L + ++              +SA+RAL   G KI  I DVTPIP
Sbjct:   17 VDGIAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQIAAERAGQAALEYGLKNLDVNVKG--------PGPGRESAVRALNSCGYKIASITDVTPIP 117
The following BLAST results are available for this feature:
BLAST of DR403177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_RHOPT6.144e-1137.0430S ribosomal protein S11 OS=Rhodopseudomonas palu... [more]
RS11_RHOPS6.144e-1137.0430S ribosomal protein S11 OS=Rhodopseudomonas palu... [more]
RS11_RHOPA6.144e-1137.0430S ribosomal protein S11 OS=Rhodopseudomonas palu... [more]
RS11_RHISN6.144e-1137.0430S ribosomal protein S11 OS=Rhizobium sp. (strain... [more]
RS11_RHIME6.144e-1137.0430S ribosomal protein S11 OS=Rhizobium meliloti GN... [more]
RS11_PSEU56.144e-1137.2730S ribosomal protein S11 OS=Pseudomonas stutzeri ... [more]
RS11_PSEPW6.144e-1137.2730S ribosomal protein S11 OS=Pseudomonas putida (s... [more]
RS11_PSEPK6.144e-1137.2730S ribosomal protein S11 OS=Pseudomonas putida (s... [more]
RS11_PSEPG6.144e-1137.2730S ribosomal protein S11 OS=Pseudomonas putida (s... [more]
RS11_PSEP16.144e-1137.2730S ribosomal protein S11 OS=Pseudomonas putida (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCSAF-PNP1244B02 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403177 ID=DR403177; Name=DR403177; organism=Citrus sinensis; type=EST; length=683bp
GGGGAGTCTGACCAGCTGCTGCTTCCGTATTTCGAGGCTTTTGTGATCAA
CTCTCCGTGTCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAA
GGAGGAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTAT
TTGGCGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTG
ACTGACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAA
GGTTAAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAG
CACAAGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCAT
ATTAAGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGG
TGCTCAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCC
GCATAGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGT
GGTAGAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATAAC
GTTCAAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGAT
GCAAGAGTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTTGGAT
TCCTTTGTGTTACCCTTCCGGATCAATTAAGTT
back to top