DR403177

Overview
NameDR403177
Unique NameDR403177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Flavedo Maturecdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6071 contig Csv1_Contig6071:1..683. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_THEON (30S ribosomal protein S11P OS=Thermococcus onnurineus (strain NA1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.910e-30
Identity = 63/113 (55.75%), Postives = 84/113 (74.34%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            +GVAHI++S+N+T IH+TDL+G ET+ R +GGM VKADRDE SPYAAM+AA+  ++   E G   +HIK+RA            AQ+A+RALAR+G++IGR+EDVTPIP D T
Sbjct:   16 WGVAHIYSSYNNTIIHITDLTGAETVSRWSGGMVVKADRDEPSPYAAMIAAKRAAEEAMEKGFVGVHIKVRAPGGSKSKTPGPGAQAAIRALARAGLRIGRVEDVTPIPHDGT 128          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_THEGJ (30S ribosomal protein S11P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps11p PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.008e-29
Identity = 62/113 (54.87%), Postives = 84/113 (74.34%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            +GVAHI++S+N+T IH+TD++G ET+ R +GGM VKADRDE SPYAAM+AA+  ++   E G   +HIK+RA            AQ+A+RALAR+G++IGR+EDVTPIP D T
Sbjct:   15 WGVAHIYSSYNNTIIHITDITGAETVSRWSGGMVVKADRDEPSPYAAMIAARRAAEEAMEKGFVGVHIKVRAPGGSKSKSPGPGAQAAIRALARAGLRIGRVEDVTPIPHDGT 127          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METB6 (30S ribosomal protein S11P OS=Methanoregula boonei (strain 6A8) GN=rps11p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.246e-29
Identity = 65/112 (58.04%), Postives = 83/112 (74.11%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 485
            +G+AHIFASFN+T I VTDLSG ET+ + +GGM VK DR+ESSPYAAM  A +V+   +E GI  +H+K+RA            AQ+A+RALAR+GM+IGRIEDVTP+P DS
Sbjct:    9 WGIAHIFASFNNTIITVTDLSGAETVTKSSGGMVVKQDRNESSPYAAMQMAANVAAIAREKGIVGVHVKVRAPGQGKQRSPGPGAQAAIRALARAGMRIGRIEDVTPVPHDS 120          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METLZ (30S ribosomal protein S11P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps11p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.933e-29
Identity = 65/112 (58.04%), Postives = 84/112 (75.00%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDS 485
            +G+AHIFASFN+T I VTDLSG ET+ + +GGM VK  R+ESSPYAAM  A +++Q  K+ GIT LHI++RA            AQ+A+RAL+R+GM+IGRIEDVTP+P DS
Sbjct:    8 WGIAHIFASFNNTIITVTDLSGAETICKSSGGMVVKQARNESSPYAAMQMAINIAQASKDKGITGLHIRVRAPGNGRQRSPGPGAQAAIRALSRAGMRIGRIEDVTPVPHDS 119          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_STAMF (30S ribosomal protein S11P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps11p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.830e-29
Identity = 65/113 (57.52%), Postives = 83/113 (73.45%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            +GVAHI++S N+T IH+TDL+G ET+ R +GGM VKADR++ SPYAAM+AA   +    + GITALHIK+RA            AQ+A+RALAR+G  IGRIEDVTPIP D+T
Sbjct:   10 WGVAHIYSSLNNTIIHITDLTGAETVSRWSGGMVVKADREKPSPYAAMIAASRAAAEAMDKGITALHIKVRAPGGHGPKTPGPGAQAAIRALARAGFIIGRIEDVTPIPHDTT 122          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_METTP (30S ribosomal protein S11P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps11p PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.456e-28
Identity = 62/116 (53.45%), Postives = 83/116 (71.55%), Query Frame = 3
Query:  141 EHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            E  + +AHI++SFN+T I +TDL+G ET+ +I+GGM VKA RDESSPY AM  A  V+++ K  GI  +H+K+RA            AQ+A+RALAR+G++IGRIEDVTPIP D T
Sbjct:    3 EGKWAIAHIYSSFNNTLITITDLTGAETIAKISGGMVVKAARDESSPYTAMQMAMQVAEQAKAKGIVGVHVKVRAPGGNKQRSPGPGAQAAIRALARAGLRIGRIEDVTPIPHDGT 118          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS14_ENCCU (40S ribosomal protein S14 OS=Encephalitozoon cuniculi GN=RPS14 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.243e-28
Identity = 60/109 (55.05%), Postives = 78/109 (71.56%), Query Frame = 3
Query:  156 VAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTD 482
            VAHI A+ NDTF+H+TD++G ET+ +ITGGM+VKA RDE SPYAAMLAAQDV+ +    G+  LH KLR             AQ+A+R L R+G+++GRIEDVTP+  D
Sbjct:   13 VAHIKATKNDTFVHITDMTGSETIAKITGGMRVKAQRDEGSPYAAMLAAQDVATKILGRGVKVLHFKLRGAGGVKPMALGPGAQTAIRTLIRAGLRVGRIEDVTPVARD 121          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_META3 (30S ribosomal protein S11P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps11p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.243e-28
Identity = 62/113 (54.87%), Postives = 81/113 (71.68%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            +GV HI+AS+N+T IHVTD++G ET+ +I+GGM VK  +DESSPYAAM  A  ++   +E GI  +HIK+RA            AQ+A+RALAR+G+KIGRIED TPIP D T
Sbjct:    5 WGVIHIYASYNNTIIHVTDITGAETIAKISGGMIVKNQKDESSPYAAMQGAFKIADMIREKGIDKVHIKVRATGGSKSKNPGPGAQAAIRALARAGIKIGRIEDATPIPHDGT 117          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_UNCMA (30S ribosomal protein S11P OS=Uncultured methanogenic archaeon RC-I GN=rps11p PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.235e-28
Identity = 62/113 (54.87%), Postives = 83/113 (73.45%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            + +AHIF+SFN+T I VTDL+G ETL + +GGM VK DR+ESSPYAAM  A +V+++ K  GI  +HI++RA            AQ+A+R+LAR+G++IGRIEDVTPIP D T
Sbjct:    9 WAIAHIFSSFNNTIITVTDLTGAETLAKTSGGMVVKQDRNESSPYAAMQMAMNVAEQIKAKGIQGVHIRVRAPGGNHQRSPGPGAQAAIRSLARAGLRIGRIEDVTPIPHDGT 121          
BLAST of DR403177 vs. ExPASy Swiss-Prot
Match: RS11_ARCFU (30S ribosomal protein S11P OS=Archaeoglobus fulgidus GN=rps11p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.531e-28
Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = 3
Query:  150 FGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSQRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 488
            +G+AHI++S+N+T I +TD++G E + R++GGM VKADRDE +PY AM AA   +   KE GI  +HIK+RA            AQ+A+RALAR+G+KIGRIEDVTPIP D T
Sbjct:   10 WGIAHIYSSYNNTIITITDITGAEIIARVSGGMIVKADRDEGNPYTAMQAALRAAAIAKEKGIDGVHIKVRAPGGNKHTTPGPGAQAAIRALARAGLKIGRIEDVTPIPHDGT 122          
The following BLAST results are available for this feature:
BLAST of DR403177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 227
Match NameE-valueIdentityDescription
RS11_THEON5.910e-3055.7530S ribosomal protein S11P OS=Thermococcus onnurin... [more]
RS11_THEGJ1.008e-2954.8730S ribosomal protein S11P OS=Thermococcus gammato... [more]
RS11_METB62.246e-2958.0430S ribosomal protein S11P OS=Methanoregula boonei... [more]
RS11_METLZ2.933e-2958.0430S ribosomal protein S11P OS=Methanocorpusculum l... [more]
RS11_STAMF3.830e-2957.5230S ribosomal protein S11P OS=Staphylothermus mari... [more]
RS11_METTP1.456e-2853.4530S ribosomal protein S11P OS=Methanosaeta thermop... [more]
RS14_ENCCU3.243e-2855.0540S ribosomal protein S14 OS=Encephalitozoon cunic... [more]
RS11_META33.243e-2854.8730S ribosomal protein S11P OS=Methanococcus aeolic... [more]
RS11_UNCMA4.235e-2854.8730S ribosomal protein S11P OS=Uncultured methanoge... [more]
RS11_ARCFU5.531e-2853.9830S ribosomal protein S11P OS=Archaeoglobus fulgid... [more]

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Properties
Property NameValue
Genbank descriptionCSAF-PNP1244B02 Flavedo Mature Citrus sinensis cDNA clone CSAF-PNP1244B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR403177 ID=DR403177; Name=DR403177; organism=Citrus sinensis; type=EST; length=683bp
GGGGAGTCTGACCAGCTGCTGCTTCCGTATTTCGAGGCTTTTGTGATCAA
CTCTCCGTGTCATCAGCAGCCATGTCAAGAAGAAAGACCAGAGAGCCTAA
GGAGGAAAATGTTACTCTTGGACCTGCCGTTAGAGATGGCGAGCATGTAT
TTGGCGTTGCCCACATTTTTGCGTCGTTTAATGACACTTTCATTCATGTG
ACTGACTTGTCTGGAAGAGAAACTCTTGTGCGCATTACTGGTGGTATGAA
GGTTAAAGCTGACAGGGATGAATCCTCCCCTTATGCAGCTATGCTTGCAG
CACAAGATGTTTCTCAACGATGCAAGGAGCTTGGCATTACTGCTCTTCAT
ATTAAGCTCCGGGCTACTGGGGGTAACAAAACTAAAACTCCTGGTCCAGG
TGCTCAGTCAGCACTTAGAGCTCTTGCTCGTTCTGGAATGAAGATTGGCC
GCATAGAGGATGTGACTCCAATTCCCACCGACAGTACCCGCAGAAAGGGT
GGTAGAAGGGGTAGAAGGTTGTAATTCTTTTCCTCACACCCATCCATAAC
GTTCAAGATGATGCCGTGGTTACAGAGAGTTTCACTCTCTTCTGTTAGAT
GCAAGAGTTATTTCCCAATTTTGTTGTTTGGAATGTCTGTAGTCTTGGAT
TCCTTTGTGTTACCCTTCCGGATCAATTAAGTT
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