DN792582

Overview
NameDN792582
Unique NameDN792582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length256
Libraries
Library NameType
Citrus sinensis flavedo cellscdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSG1_ORYGL (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Oryza glaberrima GN=WAXY PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.959e-21
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 2
Query:   11 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQL 130
            YP K R V KFN PLAH+I+AGAD + +PSRFEPCGLIQL
Sbjct:  453 YPGKVRAVVKFNAPLAHLIMAGADVLAVPSRFEPCGLIQL 492          

HSP 2 Score: 56.225 bits (134), Expect = 2.959e-21
Identity = 27/43 (62.79%), Postives = 31/43 (72.09%), Query Frame = 1
Query:  127 ITSMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP 255
            +  MRYGT    ASTGGLVDTV EG TGF MG  SV+C+ V+P
Sbjct:  492 LQGMRYGTPCACASTGGLVDTVIEGKTGFHMGRLSVNCKVVEP 534          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 6.939e-20
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 2
Query:   11 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQL 130
            YP+K R V KFN  LAH I+AGAD + + SRFEPCGLIQL
Sbjct:  452 YPDKVRAVVKFNAALAHHIMAGADLLAVTSRFEPCGLIQL 491          

HSP 2 Score: 57.3806 bits (137), Expect = 6.939e-20
Identity = 27/43 (62.79%), Postives = 30/43 (69.77%), Query Frame = 1
Query:  127 ITSMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP 255
            +  MRYGT    ASTGGLVDT+ EG TGF MG  SVDC  V+P
Sbjct:  491 LQGMRYGTPCACASTGGLVDTIIEGKTGFHMGRLSVDCNVVEP 533          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSG1_WHEAT (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WAXY PE=1 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.526e-19
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 2
Query:   11 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQL 130
            +P K R V +FN PLAH ++AGAD + + SRFEPCGLIQL
Sbjct:  459 FPTKVRAVVRFNAPLAHQMMAGADVLAVTSRFEPCGLIQL 498          

HSP 2 Score: 57.7658 bits (138), Expect = 1.526e-19
Identity = 27/43 (62.79%), Postives = 30/43 (69.77%), Query Frame = 1
Query:  127 ITSMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP 255
            +  MRYGT    ASTGGLVDT+ EG TGF MG  SVDC  V+P
Sbjct:  498 LQGMRYGTPCACASTGGLVDTIVEGKTGFHMGRLSVDCNVVEP 540          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSG1_MAIZE (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 7.383e-19
Identity = 26/40 (65.00%), Postives = 30/40 (75.00%), Query Frame = 2
Query:   11 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQL 130
            +P K R V KFN  LAH I+AGAD + + SRFEPCGLIQL
Sbjct:  449 FPGKVRAVVKFNAALAHHIMAGADVLAVTSRFEPCGLIQL 488          

HSP 2 Score: 57.3806 bits (137), Expect = 7.383e-19
Identity = 27/43 (62.79%), Postives = 30/43 (69.77%), Query Frame = 1
Query:  127 ITSMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFSVDCEAVDP 255
            +  MRYGT    ASTGGLVDT+ EG TGF MG  SVDC  V+P
Sbjct:  488 LQGMRYGTPCACASTGGLVDTIIEGKTGFHMGRLSVDCNVVEP 530          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSY1_ARATH (Soluble starch synthase, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=At5g24300 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 1.335e-12
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 2
Query:    2 EILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLH 133
            E  Y +K RG   FN+P++H I AG D +L+PSRFEPCGL QL+
Sbjct:  508 EETYRDKFRGWVGFNVPISHRITAGCDILLMPSRFEPCGLNQLY 551          

HSP 2 Score: 36.5798 bits (83), Expect = 1.335e-12
Identity = 15/25 (60.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:  121 HSITSMRYGTVPIVASTGGLVDTVE 195
            + + +MRYGT+P+V  TGGL DTVE
Sbjct:  548 NQLYAMRYGTIPVVHGTGGLRDTVE 572          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: GLGA_THEYD (Glycogen synthase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=glgA PE=3 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 1.345e-12
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = 2
Query:   11 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQL 130
            YP K      F+  LAH I AGAD +L+PSR+EPCGL QL
Sbjct:  364 YPSKVFAFIGFDEALAHKIYAGADSLLVPSRYEPCGLSQL 403          

HSP 2 Score: 43.8986 bits (102), Expect = 1.345e-12
Identity = 19/35 (54.29%), Postives = 24/35 (68.57%), Query Frame = 1
Query:  127 ITSMRYGTVPIVASTGGLVDTVEEGFTGFQMGSFS 231
            + +MRYGT+PI   TGGL DTVE+  TGF    +S
Sbjct:  403 LIAMRYGTIPICRKTGGLSDTVEDKVTGFLFSEYS 437          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSY1_SOLTU (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 2.253e-12
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 2
Query:    2 EILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLH 133
            E L+ +K R    FN+P++H I AG D +L+PSRFEPCGL QL+
Sbjct:  497 ENLFKDKFRAWVGFNVPVSHRITAGCDILLMPSRFEPCGLNQLY 540          

HSP 2 Score: 37.7354 bits (86), Expect = 2.253e-12
Identity = 16/26 (61.54%), Postives = 22/26 (84.62%), Query Frame = 1
Query:  121 HSITSMRYGTVPIVASTGGLVDTVEE 198
            + + +MRYGT+PIV STGGL DTV++
Sbjct:  537 NQLYAMRYGTIPIVHSTGGLRDTVKD 562          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSY1_WHEAT (Starch synthase 1, chloroplastic/amyloplastic OS=Triticum aestivum GN=WSSI-2 PE=2 SV=2)

HSP 1 Score: 55.0694 bits (131), Expect = 8.308e-12
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 2
Query:    2 EILYPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLH 133
            E  Y +K RG   F++P++H I AG D +L+PSRFEPCGL QL+
Sbjct:  504 ESSYKDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLY 547          

HSP 2 Score: 35.8094 bits (81), Expect = 8.308e-12
Identity = 20/48 (41.67%), Postives = 27/48 (56.25%), Query Frame = 1
Query:  121 HSITSMRYGTVPIVASTGGLVDTVE---------EGFTGFQMGSFSVD 237
            + + +M+YGTVP+V  TGGL DTVE         E  TG+     +VD
Sbjct:  544 NQLYAMQYGTVPVVHGTGGLRDTVETFNPFGAKGEEGTGWAFSPLTVD 591          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: GLGA_MYXXD (Glycogen synthase OS=Myxococcus xanthus (strain DK 1622) GN=glgA PE=3 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 1.088e-11
Identity = 20/41 (48.78%), Postives = 30/41 (73.17%), Query Frame = 2
Query:   11 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLH 133
            YP++      F+  L+H++ AGADF L+PSR+EPCGL Q++
Sbjct:  350 YPKQVGVHIGFDPGLSHLVEAGADFFLMPSRYEPCGLNQMY 390          

HSP 2 Score: 43.8986 bits (102), Expect = 1.088e-11
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 1
Query:  133 SMRYGTVPIVASTGGLVDTVEEGFTG 210
            S+RYGTVPIV +TGGLVDTVE G  G
Sbjct:  391 SLRYGTVPIVRATGGLVDTVEGGLDG 416          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSY3_SOLTU (Soluble starch synthase 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=SS3 PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 1.376e-11
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 2
Query:   11 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQL 130
            Y ++AR    ++ PL+H+I AGADFIL+PS FEPCGL QL
Sbjct: 1090 YNDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQL 1129          

HSP 2 Score: 36.5798 bits (83), Expect = 1.376e-11
Identity = 14/22 (63.64%), Postives = 19/22 (86.36%), Query Frame = 1
Query:  127 ITSMRYGTVPIVASTGGLVDTV 192
            +T+MRYG++P+V  TGGL DTV
Sbjct: 1129 LTAMRYGSIPVVRKTGGLYDTV 1150          
The following BLAST results are available for this feature:
BLAST of DN792582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
SSG1_ORYGL2.959e-2172.50Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SORBI6.939e-2067.50Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_WHEAT1.526e-1962.50Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MAIZE7.383e-1965.00Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSY1_ARATH1.335e-1256.82Soluble starch synthase, chloroplastic/amyloplasti... [more]
GLGA_THEYD1.345e-1257.50Glycogen synthase OS=Thermodesulfovibrio yellowsto... [more]
SSY1_SOLTU2.253e-1254.55Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_WHEAT8.308e-1254.55Starch synthase 1, chloroplastic/amyloplastic OS=T... [more]
GLGA_MYXXD1.088e-1148.78Glycogen synthase OS=Myxococcus xanthus (strain DK... [more]
SSY3_SOLTU1.376e-1160.00Soluble starch synthase 3, chloroplastic/amyloplas... [more]

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Properties
Property NameValue
Genbank description33i Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-33i 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN792582 ID=DN792582; Name=DN792582; organism=Citrus sinensis; type=EST; length=256bp
GGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATATTC
CTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAAGC
AGATTTGAACCTTGTGGTCTCATTCAATTACATCCATGCGTTATGGAACC
GTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGG
CTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGG
ATCCAG
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