DN792582

Overview
NameDN792582
Unique NameDN792582
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length256
Libraries
Library NameType
Citrus sinensis flavedo cellscdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSJ (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=Os06g0160700 PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.818e-11
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 2
Query:   11 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLH 133
            Y +K RG   F++P++H I AG D +L+PSRFEPCGL QL+
Sbjct:  501 YRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLY 541          

HSP 2 Score: 35.4242 bits (80), Expect = 1.818e-11
Identity = 15/25 (60.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:  121 HSITSMRYGTVPIVASTGGLVDTVE 195
            + + +M+YGTVP+V  TGGL DTVE
Sbjct:  538 NQLYAMQYGTVPVVHGTGGLRDTVE 562          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: SSY1_ORYSI (Soluble starch synthase 1, chloroplastic/amyloplastic OS=Oryza sativa subsp. indica GN=OsI_021017 PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.818e-11
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 2
Query:   11 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLH 133
            Y +K RG   F++P++H I AG D +L+PSRFEPCGL QL+
Sbjct:  501 YRDKFRGWVGFSVPVSHRITAGCDILLMPSRFEPCGLNQLY 541          

HSP 2 Score: 35.4242 bits (80), Expect = 1.818e-11
Identity = 15/25 (60.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:  121 HSITSMRYGTVPIVASTGGLVDTVE 195
            + + +M+YGTVP+V  TGGL DTVE
Sbjct:  538 NQLYAMQYGTVPVVHGTGGLRDTVE 562          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: GLGA_THESQ (Glycogen synthase OS=Thermotoga sp. (strain RQ2) GN=glgA PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 4.008e-11
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 2
Query:   11 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQL 130
            YP+K     KF++ LA  I AGAD  L+PSR+EPCGL Q+
Sbjct:  351 YPDKVSANIKFDVELAQKIYAGADIFLMPSRYEPCGLGQM 390          

HSP 2 Score: 38.5058 bits (88), Expect = 4.008e-11
Identity = 16/22 (72.73%), Postives = 19/22 (86.36%), Query Frame = 1
Query:  133 SMRYGTVPIVASTGGLVDTVEE 198
            SMRYGT+P+V  TGGL DTV+E
Sbjct:  392 SMRYGTIPVVRYTGGLADTVKE 413          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: GLGA_THEP1 (Glycogen synthase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glgA PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 4.008e-11
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 2
Query:   11 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQL 130
            YP+K     KF++ LA  I AGAD  L+PSR+EPCGL Q+
Sbjct:  351 YPDKVSANIKFDVELAQKIYAGADIFLMPSRYEPCGLGQM 390          

HSP 2 Score: 38.5058 bits (88), Expect = 4.008e-11
Identity = 16/22 (72.73%), Postives = 19/22 (86.36%), Query Frame = 1
Query:  133 SMRYGTVPIVASTGGLVDTVEE 198
            SMRYGT+P+V  TGGL DTV+E
Sbjct:  392 SMRYGTIPVVRYTGGLADTVKE 413          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: GLGA_THEMA (Glycogen synthase OS=Thermotoga maritima GN=glgA PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 4.008e-11
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 2
Query:   11 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQL 130
            YP+K     KF++ LA  I AGAD  L+PSR+EPCGL Q+
Sbjct:  351 YPDKVSANIKFDVELAQKIYAGADIFLMPSRYEPCGLGQM 390          

HSP 2 Score: 38.5058 bits (88), Expect = 4.008e-11
Identity = 16/22 (72.73%), Postives = 19/22 (86.36%), Query Frame = 1
Query:  133 SMRYGTVPIVASTGGLVDTVEE 198
            SMRYGT+P+V  TGGL DTV+E
Sbjct:  392 SMRYGTIPVVRYTGGLADTVKE 413          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: GLGA_ANADE (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=glgA PE=3 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 4.011e-11
Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = 2
Query:   11 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLH 133
            +P++      F+  LAH I AGAD  L+PSRFEPCGL Q++
Sbjct:  346 HPDRVAARIGFDEGLAHRIEAGADLFLMPSRFEPCGLNQMY 386          

HSP 2 Score: 42.3578 bits (98), Expect = 4.011e-11
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 1
Query:  133 SMRYGTVPIVASTGGLVDTVEEGFTGFQMGS 225
            S+RYGTVP+V S GGL DTVE+ F GF  G+
Sbjct:  387 SLRYGTVPVVRSVGGLADTVED-FDGFARGT 416          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: GLGA1_METCA (Glycogen synthase 1 OS=Methylococcus capsulatus GN=glgA1 PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 8.760e-11
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 2
Query:   14 PEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLH 133
            PE+      ++ PLAH+I AGAD  L+PSRFEPCGL QL+
Sbjct:  346 PERIAVTIGYDEPLAHLIEAGADIFLMPSRFEPCGLNQLY 385          

HSP 2 Score: 36.965 bits (84), Expect = 8.760e-11
Identity = 16/26 (61.54%), Postives = 19/26 (73.08%), Query Frame = 1
Query:  121 HSITSMRYGTVPIVASTGGLVDTVEE 198
            + + S RYGTVPIV   GGL DTVE+
Sbjct:  382 NQLYSQRYGTVPIVRKVGGLADTVED 407          
BLAST of DN792582 vs. ExPASy Swiss-Prot
Match: GLGA_ANAD2 (Glycogen synthase OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=glgA PE=3 SV=1)

HSP 1 Score: 46.2098 bits (108), Expect = 8.768e-11
Identity = 21/41 (51.22%), Postives = 28/41 (68.29%), Query Frame = 2
Query:   11 YPEKARGVAKFNIPLAHMIIAGADFILIPSRFEPCGLIQLH 133
            +P++      F+  LAH I AGAD  L+PSRFEPCGL Q++
Sbjct:  346 HPDRVAARIGFDEGLAHRIEAGADLFLMPSRFEPCGLNQMY 386          

HSP 2 Score: 41.2022 bits (95), Expect = 8.768e-11
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 1
Query:  133 SMRYGTVPIVASTGGLVDTVEEGFTGFQMGS 225
            S+RYGTVP+V + GGL DTVE+ F GF  G+
Sbjct:  387 SLRYGTVPVVRAVGGLADTVED-FDGFARGT 416          
The following BLAST results are available for this feature:
BLAST of DN792582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
SSY1_ORYSJ1.818e-1156.10Soluble starch synthase 1, chloroplastic/amyloplas... [more]
SSY1_ORYSI1.818e-1156.10Soluble starch synthase 1, chloroplastic/amyloplas... [more]
GLGA_THESQ4.008e-1155.00Glycogen synthase OS=Thermotoga sp. (strain RQ2) G... [more]
GLGA_THEP14.008e-1155.00Glycogen synthase OS=Thermotoga petrophila (strain... [more]
GLGA_THEMA4.008e-1155.00Glycogen synthase OS=Thermotoga maritima GN=glgA P... [more]
GLGA_ANADE4.011e-1151.22Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]
GLGA1_METCA8.760e-1157.50Glycogen synthase 1 OS=Methylococcus capsulatus GN... [more]
GLGA_ANAD28.768e-1151.22Glycogen synthase OS=Anaeromyxobacter dehalogenans... [more]

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Properties
Property NameValue
Genbank description33i Citrus sinensis flavedo cells Citrus sinensis cDNA clone Cs-33i 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN792582 ID=DN792582; Name=DN792582; organism=Citrus sinensis; type=EST; length=256bp
GGAGATACTGTACCCTGAGAAAGCCAGAGGAGTAGCGAAATTCAATATTC
CTCTGGCGCATATGATAATAGCAGGAGCTGATTTTATTTTGATTCCAAGC
AGATTTGAACCTTGTGGTCTCATTCAATTACATCCATGCGTTATGGAACC
GTACCTATCGTGGCTTCCACTGGTGGTTTGGTTGACACTGTGGAAGAAGG
CTTTACAGGATTCCAGATGGGAAGCTTCAGTGTTGACTGTGAGGCTGTGG
ATCCAG
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