DN621642

Overview
NameDN621642
Unique NameDN621642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length214
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: BIP3_MAIZE (Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.234e-15
Identity = 35/71 (49.30%), Postives = 59/71 (83.10%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAI 212
            N+KGRLS++EI++MV+EAE++  ED++ K++++A+N LE Y YNM+NTV D +K+  KL+  +K+K+E+A+
Sbjct:  534 NEKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNQLETYVYNMKNTVGDKDKLADKLEAEEKEKVEEAL 604          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 2.234e-15
Identity = 35/71 (49.30%), Postives = 59/71 (83.10%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAI 212
            N+KGRLS++EI++MV+EAE++  ED++ K++++A+N LE Y YNM+NTV D +K+  KL+  +K+K+E+A+
Sbjct:  534 NEKGRLSQEEIDRMVREAEEFAEEDKKVKERIDARNQLETYVYNMKNTVGDKDKLADKLEAEEKEKVEEAL 604          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: GRP78_SCHPO (78 kDa glucose-regulated protein homolog OS=Schizosaccharomyces pombe GN=bip1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.918e-15
Identity = 36/71 (50.70%), Postives = 57/71 (80.28%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTV-KDEKIGSKLDPADKKKIEDAI 212
            NDKGRLS+++IE+MV+EAE++  ED+  K+++EA+N LENYAY+++     DE++G K+DP DK+ + DA+
Sbjct:  533 NDKGRLSEEDIERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAV 603          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: GRP78_APLCA (78 kDa glucose-regulated protein OS=Aplysia californica PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.918e-15
Identity = 37/71 (52.11%), Postives = 57/71 (80.28%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAI 212
            ND+ RLS ++IE+M+ +AEKY  ED++ K+KV+AKN LE+YAY+++N + D EK+G+KL   DK+KI +A+
Sbjct:  537 NDQNRLSPEDIERMINDAEKYADEDKKVKEKVDAKNELESYAYSLKNQIGDKEKLGAKLSDEDKEKITEAV 607          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: BIP2_TOBAC (Luminal-binding protein 2 (Fragment) OS=Nicotiana tabacum GN=BIP2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.918e-15
Identity = 36/70 (51.43%), Postives = 57/70 (81.43%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDA 209
            NDKGRLS++EIE+MV+EAE++  ED++ K++++A+N+LE Y YNM+N + D +K+  KL+  +K+KIE A
Sbjct:  161 NDKGRLSQEEIERMVREAEEFAEEDKKVKERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETA 230          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: BIP1_TOBAC (Luminal-binding protein 1 (Fragment) OS=Nicotiana tabacum GN=BIP1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.918e-15
Identity = 36/70 (51.43%), Postives = 57/70 (81.43%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDA 209
            NDKGRLS++EIE+MV+EAE++  ED++ K++++A+N+LE Y YNM+N + D +K+  KL+  +K+KIE A
Sbjct:  161 NDKGRLSQEEIERMVREAEEFAEEDKKVKERIDARNSLETYVYNMKNQINDKDKLADKLESDEKEKIETA 230          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HS7C3_DICDI (Heat shock cognate 70 kDa protein 3 OS=Dictyostelium discoideum GN=DDB_G0293674 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.811e-15
Identity = 35/67 (52.24%), Postives = 54/67 (80.60%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIE 203
            NDKGRLS  +I KMV++AEK+K +D++ K+++E+KN LENY ++++N++ D+KI SKL  +DK  IE
Sbjct:  506 NDKGRLSLKDITKMVEDAEKFKEQDQQQKERIESKNNLENYIFSVKNSINDQKIISKLSKSDKNIIE 572          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEBR (Heat shock 70 kDa protein C OS=Caenorhabditis briggsae GN=hsp-3 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.978e-15
Identity = 36/71 (50.70%), Postives = 56/71 (78.87%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAI 212
            ND+ RLS ++IE+M+ +AEK+  +D++ K+K EA+N LE+YAY+++N + D EK+G KLD  DKK IE+A+
Sbjct:  533 NDQNRLSPEDIERMINDAEKFAEDDKKVKEKAEARNELESYAYSLKNQIGDKEKLGGKLDEDDKKTIEEAV 603          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: BIP2_ARATH (Luminal-binding protein 2 OS=Arabidopsis thaliana GN=At5g42020 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.978e-15
Identity = 37/70 (52.86%), Postives = 57/70 (81.43%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDA 209
            N+KGRLS++EI++MV+EAE++  ED++ K+K++A+NALE Y YNM+N V D +K+  KL+  +K+KIE A
Sbjct:  536 NEKGRLSQEEIDRMVKEAEEFAEEDKKVKEKIDARNALETYVYNMKNQVSDKDKLADKLEGDEKEKIEAA 605          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: BIP1_ARATH (Luminal-binding protein 1 OS=Arabidopsis thaliana GN=At5g28540 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.978e-15
Identity = 37/70 (52.86%), Postives = 57/70 (81.43%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDA 209
            N+KGRLS++EI++MV+EAE++  ED++ K+K++A+NALE Y YNM+N V D +K+  KL+  +K+KIE A
Sbjct:  536 NEKGRLSQEEIDRMVKEAEEFAEEDKKVKEKIDARNALETYVYNMKNQVNDKDKLADKLEGDEKEKIEAA 605          
The following BLAST results are available for this feature:
BLAST of DN621642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
BIP3_MAIZE2.234e-1549.30Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=... [more]
BIP2_MAIZE2.234e-1549.30Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]
GRP78_SCHPO2.918e-1550.7078 kDa glucose-regulated protein homolog OS=Schizo... [more]
GRP78_APLCA2.918e-1552.1178 kDa glucose-regulated protein OS=Aplysia califo... [more]
BIP2_TOBAC2.918e-1551.43Luminal-binding protein 2 (Fragment) OS=Nicotiana ... [more]
BIP1_TOBAC2.918e-1551.43Luminal-binding protein 1 (Fragment) OS=Nicotiana ... [more]
HS7C3_DICDI3.811e-1552.24Heat shock cognate 70 kDa protein 3 OS=Dictyosteli... [more]
HSP7C_CAEBR4.978e-1550.70Heat shock 70 kDa protein C OS=Caenorhabditis brig... [more]
BIP2_ARATH4.978e-1552.86Luminal-binding protein 2 OS=Arabidopsis thaliana ... [more]
BIP1_ARATH4.978e-1552.86Luminal-binding protein 1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06P21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621642 ID=DN621642; Name=DN621642; organism=Citrus sinensis; type=EST; length=214bp
CCAACGACAAGGGTAGATTGTCAAAGGATGAAATTGAGAAGATGGTTCAA
GAGGCCGAGAAGTACAAGGCTGAAGATGAGGAGCACAAGAAGAAGGTCGA
GGCCAAGAATGCCTTGGAAAACTATGCCTACAATATGAGGAACACTGTCA
AGGACGAGAAGATCGGCTCCAAACTTGATCCAGCTGACAAGAAGAAGATT
GAGGATGCCATTGA
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