DN621642

Overview
NameDN621642
Unique NameDN621642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length214
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: GRP78_XENLA (78 kDa glucose-regulated protein OS=Xenopus laevis GN=hspa5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.567e-13
Identity = 33/71 (46.48%), Postives = 54/71 (76.06%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAI 212
            ND+ RL+ +EIE+MV +AEK+  ED++ K++++ +N LE+YAY+++N + D EK+G KL   DK+ IE A+
Sbjct:  529 NDQNRLTPEEIERMVTDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETIEKAV 599          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP7D_CAEEL (Heat shock 70 kDa protein D OS=Caenorhabditis elegans GN=hsp-4 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.659e-13
Identity = 34/71 (47.89%), Postives = 50/71 (70.42%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAI 212
            ND  RLS ++IE+M+ +A+K+ A+D+  K+KVE++N LE YAY M+  + D EK+G KL   DK  IE A+
Sbjct:  530 NDHNRLSPEDIERMINDADKFAADDQAQKEKVESRNELEAYAYQMKTQIADKEKLGGKLTDEDKVSIESAV 600          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP72_DROSI (Major heat shock 70 kDa protein Ba OS=Drosophila simulans GN=Hsp70Ba PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.659e-13
Identity = 34/68 (50.00%), Postives = 51/68 (75.00%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLS+ EI++MV EAEKY  EDE+ ++++ ++NALE+Y +N++ +V+    G KLD ADK  + D
Sbjct:  503 NDKGRLSQAEIDRMVNEAEKYADEDEKQRQRITSRNALESYVFNVKQSVEQAPAG-KLDEADKNSVLD 569          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: GRP78_CANGA (78 kDa glucose-regulated protein homolog OS=Candida glabrata GN=KAR2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.659e-13
Identity = 34/69 (49.28%), Postives = 54/69 (78.26%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDA 209
            NDKGRL++DEI++MV+EAEK+ +ED   + K+EA+N LENYA++++N V+ + +  KL+  DK+ + DA
Sbjct:  534 NDKGRLTQDEIDRMVEEAEKFASEDAVLRTKIEARNKLENYAHSIKNQVEGD-LAEKLEEEDKETLLDA 601          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP71_DROSI (Major heat shock 70 kDa protein Ab OS=Drosophila simulans GN=Hsp70Ab PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.085e-13
Identity = 34/68 (50.00%), Postives = 50/68 (73.53%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLS+ EI++MV EAEKY  EDE+ ++++ ++NALE+Y +N++  V D+    KLD ADK  + D
Sbjct:  503 NDKGRLSQAEIDRMVNEAEKYADEDEKQRQRITSRNALESYVFNVKQAV-DQAPAGKLDEADKNSVLD 569          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: GRP78_PONAB (78 kDa glucose-regulated protein OS=Pongo abelii GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.085e-13
Identity = 32/71 (45.07%), Postives = 54/71 (76.06%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAI 212
            ND+ RL+ +EIE+MV +AEK+  ED++ K++++ +N LE+YAY+++N + D EK+G KL   DK+ +E A+
Sbjct:  528 NDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAV 598          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: GRP78_MOUSE (78 kDa glucose-regulated protein OS=Mus musculus GN=Hspa5 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 6.085e-13
Identity = 32/71 (45.07%), Postives = 54/71 (76.06%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAI 212
            ND+ RL+ +EIE+MV +AEK+  ED++ K++++ +N LE+YAY+++N + D EK+G KL   DK+ +E A+
Sbjct:  529 NDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAV 599          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: GRP78_MESAU (78 kDa glucose-regulated protein OS=Mesocricetus auratus GN=HSPA5 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.085e-13
Identity = 32/71 (45.07%), Postives = 54/71 (76.06%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAI 212
            ND+ RL+ +EIE+MV +AEK+  ED++ K++++ +N LE+YAY+++N + D EK+G KL   DK+ +E A+
Sbjct:  528 NDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAV 598          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: GRP78_HUMAN (78 kDa glucose-regulated protein OS=Homo sapiens GN=HSPA5 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 6.085e-13
Identity = 32/71 (45.07%), Postives = 54/71 (76.06%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAI 212
            ND+ RL+ +EIE+MV +AEK+  ED++ K++++ +N LE+YAY+++N + D EK+G KL   DK+ +E A+
Sbjct:  528 NDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAV 598          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: GRP78_BOVIN (78 kDa glucose-regulated protein OS=Bos taurus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.085e-13
Identity = 32/71 (45.07%), Postives = 54/71 (76.06%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDAI 212
            ND+ RL+ +EIE+MV +AEK+  ED++ K++++ +N LE+YAY+++N + D EK+G KL   DK+ +E A+
Sbjct:  529 NDQNRLTPEEIERMVNDAEKFAEEDKKLKERIDTRNELESYAYSLKNQIGDKEKLGGKLSSEDKETMEKAV 599          
The following BLAST results are available for this feature:
BLAST of DN621642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
GRP78_XENLA3.567e-1346.4878 kDa glucose-regulated protein OS=Xenopus laevis... [more]
HSP7D_CAEEL4.659e-1347.89Heat shock 70 kDa protein D OS=Caenorhabditis eleg... [more]
HSP72_DROSI4.659e-1350.00Major heat shock 70 kDa protein Ba OS=Drosophila s... [more]
GRP78_CANGA4.659e-1349.2878 kDa glucose-regulated protein homolog OS=Candid... [more]
HSP71_DROSI6.085e-1350.00Major heat shock 70 kDa protein Ab OS=Drosophila s... [more]
GRP78_PONAB6.085e-1345.0778 kDa glucose-regulated protein OS=Pongo abelii G... [more]
GRP78_MOUSE6.085e-1345.0778 kDa glucose-regulated protein OS=Mus musculus G... [more]
GRP78_MESAU6.085e-1345.0778 kDa glucose-regulated protein OS=Mesocricetus a... [more]
GRP78_HUMAN6.085e-1345.0778 kDa glucose-regulated protein OS=Homo sapiens G... [more]
GRP78_BOVIN6.085e-1345.0778 kDa glucose-regulated protein OS=Bos taurus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06P21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621642 ID=DN621642; Name=DN621642; organism=Citrus sinensis; type=EST; length=214bp
CCAACGACAAGGGTAGATTGTCAAAGGATGAAATTGAGAAGATGGTTCAA
GAGGCCGAGAAGTACAAGGCTGAAGATGAGGAGCACAAGAAGAAGGTCGA
GGCCAAGAATGCCTTGGAAAACTATGCCTACAATATGAGGAACACTGTCA
AGGACGAGAAGATCGGCTCCAAACTTGATCCAGCTGACAAGAAGAAGATT
GAGGATGCCATTGA
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