DN621642

Overview
NameDN621642
Unique NameDN621642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length214
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2889 contig Csv1_Contig2889:141..354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: GRP78_ECHMU (78 kDa glucose-regulated protein OS=Echinococcus multilocularis GN=GRP78 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.148e-11
Identity = 33/69 (47.83%), Postives = 52/69 (75.36%), Query Frame = 3
Query:    6 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDA 209
            +  RL+ +EIE+M+Q+AEK+  +D++ K++VE +N LE+ AY+++N VKD EK+G KL   + K IEDA
Sbjct:  528 ETNRLTPEEIERMIQDAEKFSDQDKQVKERVEVRNDLESLAYSIKNQVKDKEKMGGKLSDDEIKTIEDA 596          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: GRP78_ECHGR (78 kDa glucose-regulated protein OS=Echinococcus granulosus GN=GRP78 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.957e-11
Identity = 32/69 (46.38%), Postives = 52/69 (75.36%), Query Frame = 3
Query:    6 DKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKD-EKIGSKLDPADKKKIEDA 209
            +  R++ +EIE+M+Q+AEK+  +D++ K++VE +N LE+ AY+++N VKD EK+G KL   + K IEDA
Sbjct:  528 ETNRITPEEIERMIQDAEKFSDQDKQVKERVEVRNDLESLAYSIKNQVKDKEKMGGKLSDDEIKTIEDA 596          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP7B_DROME (Heat shock 70 kDa protein cognate 2 OS=Drosophila melanogaster GN=Hsc70-2 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 2.557e-11
Identity = 33/68 (48.53%), Postives = 45/68 (66.18%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK EI++M+ EAEKYK ED+  +++V++KN LE Y Y  R  V D   G  L   ++ K+ D
Sbjct:  506 NDKGRLSKAEIDRMLSEAEKYKVEDDRQRERVQSKNNLEAYIYACRQAVDDAPSG-VLSETERSKVRD 572          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP76_YEAST (Heat shock protein SSB2 OS=Saccharomyces cerevisiae GN=SSB2 PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 3.339e-11
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAI 212
            N  GRLS +EIEKMV +AE++KA DE   KK EA+  LE+Y  ++  TV D  + SKL    K KIE A+
Sbjct:  509 NAVGRLSSEEIEKMVNQAEEFKAADEAFAKKHEARQRLESYVASIEQTVTDPVLSSKLKRGSKSKIEAAL 578          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP75_YEAST (Heat shock protein SSB1 OS=Saccharomyces cerevisiae GN=SSB1 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.339e-11
Identity = 35/70 (50.00%), Postives = 45/70 (64.29%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAI 212
            N  GRLS +EIEKMV +AE++KA DE   KK EA+  LE+Y  ++  TV D  + SKL    K KIE A+
Sbjct:  509 NAVGRLSSEEIEKMVNQAEEFKAADEAFAKKHEARQRLESYVASIEQTVTDPVLSSKLKRGSKSKIEAAL 578          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP75_ZYGRC (Heat shock protein SSB OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / IFO 1130 / NBRC 1623 / NCYC 568) GN=SSB PE=3 SV=3)

HSP 1 Score: 66.6254 bits (161), Expect = 4.361e-11
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAI 212
            N  GRLS DEIEKMV +AE++KA DE   KK EA+  LE+Y  ++   V D  + SKL    K KIE A+
Sbjct:  509 NAVGRLSSDEIEKMVNQAEEFKAADEAFAKKHEARQRLESYVASIEQQVTDPVLSSKLKRGSKTKIESAL 578          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP75_KLUDE (Heat shock protein SSB OS=Kluyveromyces delphensis GN=SSB PE=3 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 9.715e-11
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAI 212
            N  GRLS ++IEKMV +AE++KA DE   K+ EAK  LE+Y  ++  TV D  + SKL    K KIE A+
Sbjct:  509 NAVGRLSSEDIEKMVNQAEEFKAADEAFAKRHEAKQRLESYVASIEQTVTDPVLSSKLKRGSKTKIEAAL 578          
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP75_CANGA (Heat shock protein SSB OS=Candida glabrata GN=SSB1 PE=3 SV=3)

HSP 1 Score: 65.4698 bits (158), Expect = 9.715e-11
Identity = 34/70 (48.57%), Postives = 45/70 (64.29%), Query Frame = 3
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAI 212
            N  GRLS ++IEKMV +AE++KA DE   K+ EAK  LE+Y  ++  TV D  + SKL    K KIE A+
Sbjct:  509 NAVGRLSSEDIEKMVNQAEEFKAADEAFAKRHEAKQRLESYVASIEQTVTDPVLSSKLKRGSKTKIEAAL 578          
The following BLAST results are available for this feature:
BLAST of DN621642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
GRP78_ECHMU1.148e-1147.8378 kDa glucose-regulated protein OS=Echinococcus m... [more]
GRP78_ECHGR1.957e-1146.3878 kDa glucose-regulated protein OS=Echinococcus g... [more]
HSP7B_DROME2.557e-1148.53Heat shock 70 kDa protein cognate 2 OS=Drosophila ... [more]
HSP76_YEAST3.339e-1150.00Heat shock protein SSB2 OS=Saccharomyces cerevisia... [more]
HSP75_YEAST3.339e-1150.00Heat shock protein SSB1 OS=Saccharomyces cerevisia... [more]
HSP75_ZYGRC4.361e-1150.00Heat shock protein SSB OS=Zygosaccharomyces rouxii... [more]
HSP75_KLUDE9.715e-1148.57Heat shock protein SSB OS=Kluyveromyces delphensis... [more]
HSP75_CANGA9.715e-1148.57Heat shock protein SSB OS=Candida glabrata GN=SSB1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06P21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621642 ID=DN621642; Name=DN621642; organism=Citrus sinensis; type=EST; length=214bp
CCAACGACAAGGGTAGATTGTCAAAGGATGAAATTGAGAAGATGGTTCAA
GAGGCCGAGAAGTACAAGGCTGAAGATGAGGAGCACAAGAAGAAGGTCGA
GGCCAAGAATGCCTTGGAAAACTATGCCTACAATATGAGGAACACTGTCA
AGGACGAGAAGATCGGCTCCAAACTTGATCCAGCTGACAAGAAGAAGATT
GAGGATGCCATTGA
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