DN621642

Overview
NameDN621642
Unique NameDN621642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length214
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2889 contig Csv1_Contig2889:141..354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HS71B_BOVIN (Heat shock 70 kDa protein 1B OS=Bos taurus GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.935e-20
Identity = 45/68 (66.18%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK+EIE+MVQEAEKYKAEDE  +++V AKNALE+YA+NM++ V+DE +  K+  ADKKK+ D
Sbjct:  505 NDKGRLSKEEIERMVQEAEKYKAEDEVQRERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLD 572
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HS71B_BOSMU (Heat shock 70 kDa protein 1B OS=Bos mutus grunniens GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.935e-20
Identity = 45/68 (66.18%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK+EIE+MVQEAEKYKAEDE  +++V AKNALE+YA+NM++ V+DE +  K+  ADKKK+ D
Sbjct:  505 NDKGRLSKEEIERMVQEAEKYKAEDEVQRERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLD 572
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HS71A_BOVIN (Heat shock 70 kDa protein 1A OS=Bos taurus GN=HSPA1A PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.935e-20
Identity = 45/68 (66.18%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK+EIE+MVQEAEKYKAEDE  +++V AKNALE+YA+NM++ V+DE +  K+  ADKKK+ D
Sbjct:  505 NDKGRLSKEEIERMVQEAEKYKAEDEVQRERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLD 572
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HS71B_PIG (Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.139e-20
Identity = 45/68 (66.18%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK+EIE+MVQEAEKYKAEDE  +++V AKNALE+YA+NM++ V+DE +  K+  ADKKK+ D
Sbjct:  505 NDKGRLSKEEIERMVQEAEKYKAEDEIQRERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLD 572
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP71_CANFA (Heat shock 70 kDa protein 1 OS=Canis familiaris GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.712e-20
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK+EIE+MVQEAEKYKAEDE  + +V AKNALE+YA+NM++ V+DE +  K+  ADKKK+ D
Sbjct:  505 NDKGRLSKEEIERMVQEAEKYKAEDEVQRDRVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLD 572
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP7C_SAGOE (Heat shock cognate 71 kDa protein OS=Saguinus oedipus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 44/68 (64.71%), Postives = 59/68 (86.76%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK++IE+MVQEAEKYKAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D
Sbjct:  505 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILD 572
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP7C_RAT (Heat shock cognate 71 kDa protein OS=Rattus norvegicus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 44/68 (64.71%), Postives = 59/68 (86.76%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK++IE+MVQEAEKYKAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D
Sbjct:  505 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILD 572
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP7C_PONAB (Heat shock cognate 71 kDa protein OS=Pongo abelii GN=HSPA8 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 44/68 (64.71%), Postives = 59/68 (86.76%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK++IE+MVQEAEKYKAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D
Sbjct:  505 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILD 572
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP7C_ORYLA (Heat shock cognate 71 kDa protein OS=Oryzias latipes GN=hsc70 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 44/68 (64.71%), Postives = 57/68 (83.82%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK++IE+MVQEAEKYKAED+  + KV AKN LE+YA+NM++TV+DEK+  K+   DK+KI D
Sbjct:  503 NDKGRLSKEDIERMVQEAEKYKAEDDVQRDKVSAKNGLESYAFNMKSTVEDEKLAGKISDEDKQKILD 570
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP7C_MOUSE (Heat shock cognate 71 kDa protein OS=Mus musculus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 44/68 (64.71%), Postives = 59/68 (86.76%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK++IE+MVQEAEKYKAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D
Sbjct:  505 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILD 572
The following BLAST results are available for this feature:
BLAST of DN621642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
HS71B_BOVIN3.935e-2066.18Heat shock 70 kDa protein 1B OS=Bos taurus GN=HSPA... [more]
HS71B_BOSMU3.935e-2066.18Heat shock 70 kDa protein 1B OS=Bos mutus grunnien... [more]
HS71A_BOVIN3.935e-2066.18Heat shock 70 kDa protein 1A OS=Bos taurus GN=HSPA... [more]
HS71B_PIG5.139e-2066.18Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA... [more]
HSP71_CANFA6.712e-2066.18Heat shock 70 kDa protein 1 OS=Canis familiaris GN... [more]
HSP7C_SAGOE8.766e-2064.71Heat shock cognate 71 kDa protein OS=Saguinus oedi... [more]
HSP7C_RAT8.766e-2064.71Heat shock cognate 71 kDa protein OS=Rattus norveg... [more]
HSP7C_PONAB8.766e-2064.71Heat shock cognate 71 kDa protein OS=Pongo abelii ... [more]
HSP7C_ORYLA8.766e-2064.71Heat shock cognate 71 kDa protein OS=Oryzias latip... [more]
HSP7C_MOUSE8.766e-2064.71Heat shock cognate 71 kDa protein OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06P21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621642 ID=DN621642; Name=DN621642; organism=Citrus sinensis; type=EST; length=214bp
CCAACGACAAGGGTAGATTGTCAAAGGATGAAATTGAGAAGATGGTTCAA
GAGGCCGAGAAGTACAAGGCTGAAGATGAGGAGCACAAGAAGAAGGTCGA
GGCCAAGAATGCCTTGGAAAACTATGCCTACAATATGAGGAACACTGTCA
AGGACGAGAAGATCGGCTCCAAACTTGATCCAGCTGACAAGAAGAAGATT
GAGGATGCCATTGA
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