DN621642

Overview
NameDN621642
Unique NameDN621642
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length214
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2889 contig Csv1_Contig2889:141..354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP7C_HUMAN (Heat shock cognate 71 kDa protein OS=Homo sapiens GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 44/68 (64.71%), Postives = 59/68 (86.76%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK++IE+MVQEAEKYKAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D
Sbjct:  505 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILD 572
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP7C_HORSE (Heat shock cognate 71 kDa protein OS=Equus caballus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 44/68 (64.71%), Postives = 59/68 (86.76%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK++IE+MVQEAEKYKAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D
Sbjct:  505 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILD 572
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP7C_CRIGR (Heat shock cognate 71 kDa protein OS=Cricetulus griseus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 44/68 (64.71%), Postives = 59/68 (86.76%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK++IE+MVQEAEKYKAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D
Sbjct:  505 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILD 572
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP7C_BOVIN (Heat shock cognate 71 kDa protein OS=Bos taurus GN=HSPA8 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 44/68 (64.71%), Postives = 59/68 (86.76%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK++IE+MVQEAEKYKAEDE+ + KV +KN+LE+YA+NM+ TV+DEK+  K++  DK+KI D
Sbjct:  505 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATVEDEKLQGKINDEDKQKILD 572
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HS71A_PIG (Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.766e-20
Identity = 45/68 (66.18%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK+EIE+MVQEAEKYKAEDE  +++V AKNALE+YA+NM++ V+DE +  K+  ADKKK+ D
Sbjct:  505 NDKGRLSKEEIERMVQEAEKYKAEDEIQRERVGAKNALESYAFNMKSVVEDEGLKGKISEADKKKVLD 572
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP71_RAT (Heat shock 70 kDa protein 1A/1B OS=Rattus norvegicus GN=Hspa1a PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.145e-19
Identity = 44/68 (64.71%), Postives = 58/68 (85.29%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK+EIE+MVQEAE+YKAEDE  +++V AKNALE+YA+NM++ V+DE +  K+  ADKKK+ D
Sbjct:  505 NDKGRLSKEEIERMVQEAERYKAEDEVQRERVAAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLD 572
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP71_CERAE (Heat shock 70 kDa protein 1 OS=Cercopithecus aethiops GN=HSPA1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.145e-19
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK+EIE+MVQEAEKYKAEDE  +++V AKNALE+YA NM++ V+DE +  K+  ADKKK+ D
Sbjct:  502 NDKGRLSKEEIERMVQEAEKYKAEDEVQRERVSAKNALESYALNMKSAVEDEGLKGKISEADKKKVLD 569
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HS71B_MOUSE (Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hspa1b PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 1.145e-19
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK+EIE+MVQEAE+YKAEDE  + +V AKNALE+YA+NM++ V+DE +  KL  ADKKK+ D
Sbjct:  505 NDKGRLSKEEIERMVQEAERYKAEDEVQRDRVAAKNALESYAFNMKSAVEDEGLKGKLSEADKKKVLD 572
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HS71A_MOUSE (Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hspa1a PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.145e-19
Identity = 45/68 (66.18%), Postives = 57/68 (83.82%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK+EIE+MVQEAE+YKAEDE  + +V AKNALE+YA+NM++ V+DE +  KL  ADKKK+ D
Sbjct:  505 NDKGRLSKEEIERMVQEAERYKAEDEVQRDRVAAKNALESYAFNMKSAVEDEGLKGKLSEADKKKVLD 572
[Close]
BLAST of DN621642 vs. ExPASy Swiss-Prot
Match: HSP7C_DANRE (Heat shock cognate 71 kDa protein OS=Danio rerio GN=hspa8 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.495e-19
Identity = 44/68 (64.71%), Postives = 57/68 (83.82%), Query Frame = 3 
Query:    3 NDKGRLSKDEIEKMVQEAEKYKAEDEEHKKKVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIED 206
            NDKGRLSK++IE+MVQEAEKYKAED+  + KV AKN LE+YA+NM++TV+DEK+  K+   DK+KI D
Sbjct:  505 NDKGRLSKEDIERMVQEAEKYKAEDDVQRDKVSAKNGLESYAFNMKSTVEDEKLKGKISDEDKQKILD 572
The following BLAST results are available for this feature:
BLAST of DN621642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 168
Match NameE-valueIdentityDescription
HSP7C_HUMAN8.766e-2064.71Heat shock cognate 71 kDa protein OS=Homo sapiens ... [more]
HSP7C_HORSE8.766e-2064.71Heat shock cognate 71 kDa protein OS=Equus caballu... [more]
HSP7C_CRIGR8.766e-2064.71Heat shock cognate 71 kDa protein OS=Cricetulus gr... [more]
HSP7C_BOVIN8.766e-2064.71Heat shock cognate 71 kDa protein OS=Bos taurus GN... [more]
HS71A_PIG8.766e-2066.18Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA... [more]
HSP71_RAT1.145e-1964.71Heat shock 70 kDa protein 1A/1B OS=Rattus norvegic... [more]
HSP71_CERAE1.145e-1966.18Heat shock 70 kDa protein 1 OS=Cercopithecus aethi... [more]
HS71B_MOUSE1.145e-1966.18Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hs... [more]
HS71A_MOUSE1.145e-1966.18Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hs... [more]
HSP7C_DANRE1.495e-1964.71Heat shock cognate 71 kDa protein OS=Danio rerio G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06P21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006P21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621642 ID=DN621642; Name=DN621642; organism=Citrus sinensis; type=EST; length=214bp
CCAACGACAAGGGTAGATTGTCAAAGGATGAAATTGAGAAGATGGTTCAA
GAGGCCGAGAAGTACAAGGCTGAAGATGAGGAGCACAAGAAGAAGGTCGA
GGCCAAGAATGCCTTGGAAAACTATGCCTACAATATGAGGAACACTGTCA
AGGACGAGAAGATCGGCTCCAAACTTGATCCAGCTGACAAGAAGAAGATT
GAGGATGCCATTGA
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