DN621560

Overview
NameDN621560
Unique NameDN621560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_COLP3 (S-adenosylmethionine synthetase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=metK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.731e-22
Identity = 55/103 (53.40%), Postives = 72/103 (69.90%), Query Frame = -3
Query:  405 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFT 713
            KVDRS AY  R  AK+IVA+GLA RC +Q+SYAIGV EP S+ +DT+ TG I ++ ++ IV+E+FD RP  I   LDL    +  + +TAAYGHFGRE  + T
Sbjct:  270 KVDRSAAYAGRYVAKNIVAAGLADRCEIQISYAIGVAEPTSISIDTFGTGSISEERLVEIVREHFDLRPYGITKMLDLL---HPMYQQTAAYGHFGREPFEMT 369          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_CLOAB (S-adenosylmethionine synthetase OS=Clostridium acetobutylicum GN=metK PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.731e-22
Identity = 53/105 (50.48%), Postives = 75/105 (71.43%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRS AY  R  AK++VA+G+A +  +Q++YAIGV +P+S+ VDT+ TGKI + +I+ IV++ FD RPG I  +L+LKR     + + AAYGHFGR D +  WE
Sbjct:  278 KVDRSAAYAARWVAKNLVAAGIADKLEIQLAYAIGVAKPVSISVDTFGTGKIEESKIVEIVEKVFDLRPGAIIRDLNLKR---PIYRQVAAYGHFGRLDVELPWE 379          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_XYLFM (S-adenosylmethionine synthetase OS=Xylella fastidiosa (strain M12) GN=metK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 53/104 (50.96%), Postives = 75/104 (72.12%), Query Frame = -3
Query:  402 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTW 713
            KVDRS +Y VR  AK++VA+GLA RC VQVSYAIGV EP+S+ V T+ TGK+PD +I ++++++FD RP  I   LDL    +  +  +A+YGHFGR+  +F +
Sbjct:  272 KVDRSASYAVRYVAKNVVAAGLADRCEVQVSYAIGVAEPISISVTTFGTGKVPDDKIEKLIRQHFDLRPYGIIKMLDLI---HPIYQPSASYGHFGRKPREFAY 372          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_SYNPW (S-adenosylmethionine synthetase OS=Synechococcus sp. (strain WH7803) GN=metK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 53/112 (47.32%), Postives = 73/112 (65.18%), Query Frame = -3
Query:  390 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKR----GGNSRFLKTAAYGHFGREDPDFTWEVVK 713
            KVDRS AY  R  AK +VA+GLA+R  VQ+SYAIGV +P+S+ V+++ TGK+ + E+  +V+++FD RPG I     L+      G   +  TAAYGHFGR D    WE V+
Sbjct:  288 KVDRSAAYAARYVAKCLVAAGLAQRAEVQLSYAIGVAKPVSILVESFGTGKVSNAELTELVQQHFDLRPGAIIQQFKLREMPALSGGRFYRDTAAYGHFGRPDLKLPWEDVE 399          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_SHESH (S-adenosylmethionine synthetase OS=Shewanella sediminis (strain HAW-EB3) GN=metK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 54/105 (51.43%), Postives = 73/105 (69.52%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ ++T+ TGK+ ++ ++ +V+++FD RP  +   LDL R     +  TAAYGHFGR   +F WE
Sbjct:  270 KVDRSAAYAARYVAKNIVAAGLADRCELQVSYAIGVAEPTSISIETFGTGKVSEEALIALVRQHFDLRPYGLTEMLDLAR---PIYQSTAAYGHFGRN--EFPWE 369          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_SHELP (S-adenosylmethionine synthetase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=metK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 55/105 (52.38%), Postives = 73/105 (69.52%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+T+ TGK+ ++ ++ +V+++FD RP  +   LDL R     +  TAAYGHFGR   +F WE
Sbjct:  270 KVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSISVETFGTGKVSEEVLIGLVRQHFDLRPYGLTEMLDLAR---PIYKATAAYGHFGRN--EFPWE 369          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_SALHS (S-adenosylmethionine synthetase OS=Salmonella heidelberg (strain SL476) GN=metK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 56/105 (53.33%), Postives = 74/105 (70.48%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV EP S+ V+T+ T K+P ++++ +V+E FD RP  +   LDL    +  + +TAAYGHFGRE  +F WE
Sbjct:  270 KVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPVEQLILLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--NFPWE 369          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_PSEFS (S-adenosylmethionine synthetase OS=Pseudomonas fluorescens (strain SBW25) GN=metK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 58/115 (50.43%), Postives = 74/115 (64.35%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD----------FTWE 713
            KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV +P S+ ++T+ TGKI D +I+++V+E FD RP  I   LDL    +  + +TAAYGHFGR              FTWE
Sbjct:  271 KVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISLNTFGTGKISDDKIVKLVREIFDLRPYAITTMLDLL---HPMYQETAAYGHFGRTPAQKTVGDDTFTTFTWE 382          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_PSEF5 (S-adenosylmethionine synthetase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=metK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 58/115 (50.43%), Postives = 74/115 (64.35%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGRED----------PDFTWE 713
            KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV +P S+ ++T+ TGKI D +I+++V+E FD RP  I   LDL    +  + +TAAYGHFGR              FTWE
Sbjct:  271 KVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISLNTFGTGKISDDKIIKLVREVFDLRPYAITTMLDLL---HPMYQETAAYGHFGRAPQTKTVGDDTFTTFTWE 382          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_PROM9 (S-adenosylmethionine synthetase OS=Prochlorococcus marinus (strain MIT 9312) GN=metK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 57/113 (50.44%), Postives = 72/113 (63.72%), Query Frame = -3
Query:  390 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMI-----AINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVK 713
            KVDRS AY  R  AKSIV + LA++  VQ+SYAIGV +P+S+ V+T+ TG I    +  ++KE+FD RP  I       NL  K GGN  F KTA+YGHFGR D    WE V+
Sbjct:  288 KVDRSAAYAARYVAKSIVKAKLAKKAEVQLSYAIGVAKPISILVETFDTGVISQANLTELIKEHFDLRPAAIIKEFNLRNLPKKMGGNF-FRKTASYGHFGRRDLQLPWENVE 399          
The following BLAST results are available for this feature:
BLAST of DN621560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_COLP33.731e-2253.40S-adenosylmethionine synthetase OS=Colwellia psych... [more]
METK_CLOAB3.731e-2250.48S-adenosylmethionine synthetase OS=Clostridium ace... [more]
METK_XYLFM4.873e-2250.96S-adenosylmethionine synthetase OS=Xylella fastidi... [more]
METK_SYNPW4.873e-2247.32S-adenosylmethionine synthetase OS=Synechococcus s... [more]
METK_SHESH4.873e-2251.43S-adenosylmethionine synthetase OS=Shewanella sedi... [more]
METK_SHELP4.873e-2252.38S-adenosylmethionine synthetase OS=Shewanella loih... [more]
METK_SALHS4.873e-2253.33S-adenosylmethionine synthetase OS=Salmonella heid... [more]
METK_PSEFS4.873e-2250.43S-adenosylmethionine synthetase OS=Pseudomonas flu... [more]
METK_PSEF54.873e-2250.43S-adenosylmethionine synthetase OS=Pseudomonas flu... [more]
METK_PROM94.873e-2250.44S-adenosylmethionine synthetase OS=Prochlorococcus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06O03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621560 ID=DN621560; Name=DN621560; organism=Citrus sinensis; type=EST; length=715bp
GGCCCCCCCTTTTTTTTTCAGAGATAAGAAGTAGATGAATACTCATAATT
TGATTATGAAGAAAAAAATGCATTAATAGTACATTAACAAATAACAATGT
GTCTCCACAAACGAGCTCTTCTTCCATCTCTATTTCTCTTCCTAGCATAT
CTCATACAGGCAACTTCTCTGTAATTCTTTCATCGACTATGACTCAATTA
GACCACATATATCTTTCTATTATGGCAAAGATAATACAAATTTATTTATA
AAAAAAAAAGGCCAAGACCAAGAGAGAAAAAAGACAGAATCTGACAGGCA
GACGAAAGAACAAGTAAATTATTGAGTTCAAACAAAGAATGAAACTGCAT
ACTTAAATTCTACTCTTGGGGTTTCTCATACTTGAGGGGCTTCACCACCT
CCCATGTGAAGTCAGGATCCTCCCTTCCAAAATGCCCATATGCAGCAGTC
TTCAAAAACCTGCTATTTCCTCCCCTCTTGAGATCCAAGTTAATGGCAAT
CATTCCAGGCCTGAAATCAAAGTTCTCCTTCACAATCCTCAGGATCTCCT
TGTCCGGAATCTTTCCAGTTCGATAAGTGTCAACAAACACTGAAAGGGGC
TCTGGGACACCAATAGCATAAGAAACCTGCACAATGCAGCGGCGAGCAAG
GCCACTGGCAACGATGCTCTTTGCTGCCTGCCTCACAATGTAAGCACCAC
TTCTATCAACCTTGG
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