DN621560

Overview
NameDN621560
Unique NameDN621560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_LISMH (S-adenosylmethionine synthetase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=metK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRSGAY  R  AK+IVA+GLA++  VQV+YAIGV  P+S+ +DTY T    ++E++  V E FD RP  I   LDL+R     + +TAA+GHFGR D D  WE
Sbjct:  284 KVDRSGAYAARYVAKNIVAAGLAKKVEVQVAYAIGVARPVSISIDTYGTSDYSEQELIDGVNELFDLRPAGIIHMLDLRR---PIYRQTAAFGHFGRSDLDLPWE 385          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_LISMF (S-adenosylmethionine synthetase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=metK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRSGAY  R  AK+IVA+GLA++  VQV+YAIGV  P+S+ +DTY T    ++E++  V E FD RP  I   LDL+R     + +TAA+GHFGR D D  WE
Sbjct:  284 KVDRSGAYAARYVAKNIVAAGLAKKVEVQVAYAIGVARPVSISIDTYGTSDYSEQELIDGVNELFDLRPAGIIHMLDLRR---PIYRQTAAFGHFGRSDLDLPWE 385          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_LISMC (S-adenosylmethionine synthetase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=metK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRSGAY  R  AK+IVA+GLA++  VQV+YAIGV  P+S+ +DTY T    ++E++  V E FD RP  I   LDL+R     + +TAA+GHFGR D D  WE
Sbjct:  284 KVDRSGAYAARYVAKNIVAAGLAKKVEVQVAYAIGVARPVSISIDTYGTSDYSEQELIDGVNELFDLRPAGIIHMLDLRR---PIYRQTAAFGHFGRSDLDLPWE 385          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_LISIN (S-adenosylmethionine synthetase OS=Listeria innocua GN=metK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 55/105 (52.38%), Postives = 71/105 (67.62%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRSGAY  R  AK+IVA+GLA++  VQV+YAIGV  P+S+ +DTY T    ++E++  V E FD RP  I   LDL+R     + +TAA+GHFGR D D  WE
Sbjct:  284 KVDRSGAYAARYVAKNIVAAGLAKKVEVQVAYAIGVARPVSISIDTYGTSDYSEQELIDGVNELFDLRPAGIIHMLDLRR---PIYRQTAAFGHFGRSDLDLPWE 385          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_DESVM (S-adenosylmethionine synthetase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=metK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 54/105 (51.43%), Postives = 71/105 (67.62%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRSGAY+ R  AK++V +GLA +C VQ++Y IGV EP+SV V +  + ++ D+ + R V+E FD RP  I   LDL R     + KT  YGHFGRE P+FTWE
Sbjct:  274 KVDRSGAYMGRYIAKNVVKAGLAPKCEVQIAYCIGVAEPVSVLVSSLGSSELSDEVLTRAVREVFDLRPYHIIKRLDLNR---PIYGKTTCYGHFGRELPEFTWE 375          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_DEIRA (S-adenosylmethionine synthetase OS=Deinococcus radiodurans GN=metK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 54/105 (51.43%), Postives = 73/105 (69.52%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRS AY  R  AK+IVA+GLARR +V+++YAIG   P+S+ VDTY TG + D+++  ++  +FD RP  I   LDL+R     + +TAAYGHFGR  P+F WE
Sbjct:  295 KVDRSAAYYARYVAKNIVAAGLARRALVEIAYAIGRAHPVSLRVDTYGTGTVSDEKLDELIAAHFDARPQAIIAQLDLQR---PIYAQTAAYGHFGR--PEFPWE 394          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_CLOTE (S-adenosylmethionine synthetase OS=Clostridium tetani GN=metK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 52/111 (46.85%), Postives = 77/111 (69.37%), Query Frame = -3
Query:  381 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWEVVKPLK 713
            KVDRS AY  R  AK++VA+G+A +  VQ++YAIG+ +P+S+ V+T+ TGKI D++I+ I+ + FD RP  I   L+L+R     + +TAAYGHFGR D +  WE +  L+
Sbjct:  278 KVDRSAAYAARWVAKNLVAAGVADKLEVQLAYAIGIAKPVSISVETFGTGKIDDRKIVEIINKVFDLRPSAIIKELNLRR---PIYKQTAAYGHFGRTDVELPWESLNKLE 385          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_AZOVD (S-adenosylmethionine synthetase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=metK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 58/115 (50.43%), Postives = 74/115 (64.35%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPD----------FTWE 713
            KVDRS AY  R  AK+IVA+GLA RC +QVSYAIGV +P S+ ++T+ TGKI D  I+++V+E+FD RP  I   LDL    +  +  TAAYGHFGR   +          FTWE
Sbjct:  271 KVDRSAAYAGRYVAKNIVAAGLAERCEIQVSYAIGVAQPTSISINTFGTGKIGDDRIVQLVREHFDLRPYAITHMLDLL---HPMYRPTAAYGHFGRTPVEMTVGNDSFTAFTWE 382          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_ACTPJ (S-adenosylmethionine synthetase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=metK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 54/105 (51.43%), Postives = 74/105 (70.48%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRS AY  R  AK+IVA+GLA RC +Q+SYAIGV +P S+ V+T+ TGK+ ++ +++++ +NFD RP  +   LDL R     + +TAAYGHFGRE   F WE
Sbjct:  270 KVDRSAAYAARYVAKNIVAAGLADRCEIQLSYAIGVADPTSIMVETFGTGKVSNETLVKLIYQNFDLRPYGLIKMLDLIR---PIYRETAAYGHFGRE--HFPWE 369          
BLAST of DN621560 vs. ExPASy Swiss-Prot
Match: METK_ACTP7 (S-adenosylmethionine synthetase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=metK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.873e-22
Identity = 54/105 (51.43%), Postives = 74/105 (70.48%), Query Frame = -3
Query:  399 KVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDTYRTGKIPDKEILRIVKENFDFRPGMIAINLDLKRGGNSRFLKTAAYGHFGREDPDFTWE 713
            KVDRS AY  R  AK+IVA+GLA RC +Q+SYAIGV +P S+ V+T+ TGK+ ++ +++++ +NFD RP  +   LDL R     + +TAAYGHFGRE   F WE
Sbjct:  270 KVDRSAAYAARYVAKNIVAAGLADRCEIQLSYAIGVADPTSIMVETFGTGKVSNETLVKLIYQNFDLRPYGLIKMLDLIR---PIYRETAAYGHFGRE--HFPWE 369          
The following BLAST results are available for this feature:
BLAST of DN621560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_LISMH4.873e-2252.38S-adenosylmethionine synthetase OS=Listeria monocy... [more]
METK_LISMF4.873e-2252.38S-adenosylmethionine synthetase OS=Listeria monocy... [more]
METK_LISMC4.873e-2252.38S-adenosylmethionine synthetase OS=Listeria monocy... [more]
METK_LISIN4.873e-2252.38S-adenosylmethionine synthetase OS=Listeria innocu... [more]
METK_DESVM4.873e-2251.43S-adenosylmethionine synthetase OS=Desulfovibrio v... [more]
METK_DEIRA4.873e-2251.43S-adenosylmethionine synthetase OS=Deinococcus rad... [more]
METK_CLOTE4.873e-2246.85S-adenosylmethionine synthetase OS=Clostridium tet... [more]
METK_AZOVD4.873e-2250.43S-adenosylmethionine synthetase OS=Azotobacter vin... [more]
METK_ACTPJ4.873e-2251.43S-adenosylmethionine synthetase OS=Actinobacillus ... [more]
METK_ACTP74.873e-2251.43S-adenosylmethionine synthetase OS=Actinobacillus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06O03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621560 ID=DN621560; Name=DN621560; organism=Citrus sinensis; type=EST; length=715bp
GGCCCCCCCTTTTTTTTTCAGAGATAAGAAGTAGATGAATACTCATAATT
TGATTATGAAGAAAAAAATGCATTAATAGTACATTAACAAATAACAATGT
GTCTCCACAAACGAGCTCTTCTTCCATCTCTATTTCTCTTCCTAGCATAT
CTCATACAGGCAACTTCTCTGTAATTCTTTCATCGACTATGACTCAATTA
GACCACATATATCTTTCTATTATGGCAAAGATAATACAAATTTATTTATA
AAAAAAAAAGGCCAAGACCAAGAGAGAAAAAAGACAGAATCTGACAGGCA
GACGAAAGAACAAGTAAATTATTGAGTTCAAACAAAGAATGAAACTGCAT
ACTTAAATTCTACTCTTGGGGTTTCTCATACTTGAGGGGCTTCACCACCT
CCCATGTGAAGTCAGGATCCTCCCTTCCAAAATGCCCATATGCAGCAGTC
TTCAAAAACCTGCTATTTCCTCCCCTCTTGAGATCCAAGTTAATGGCAAT
CATTCCAGGCCTGAAATCAAAGTTCTCCTTCACAATCCTCAGGATCTCCT
TGTCCGGAATCTTTCCAGTTCGATAAGTGTCAACAAACACTGAAAGGGGC
TCTGGGACACCAATAGCATAAGAAACCTGCACAATGCAGCGGCGAGCAAG
GCCACTGGCAACGATGCTCTTTGCTGCCTGCCTCACAATGTAAGCACCAC
TTCTATCAACCTTGG
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