DN621544

Overview
NameDN621544
Unique NameDN621544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 42/110 (38.18%), Postives = 62/110 (56.36%), Query Frame = -2
Query:  357 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQ--VCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 680
            L +MDG   T +V V+ +TNRAD LD AL+RPGRLDR +   LP  +++R +F+  + + K+  S     +         S A+IA IC EA +HA R+    +   +FE
Sbjct:  437 LVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFE 546          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PEX1_MOUSE (Peroxisome biogenesis factor 1 OS=Mus musculus GN=Pex1 PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 36/96 (37.50%), Postives = 58/96 (60.42%), Query Frame = -2
Query:  393 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVR 680
            L Q+DG +    V V+ AT+R D +DPALLRPGRLD+ +  P PD+  +  +  V +  + L+D+VDL+   S  D  + A++ A+   A + A++
Sbjct:  966 LTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILTVLSKSLALADDVDLQHVASVTDSFTGADLKALLYNAQLEALQ 1061          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: PEX1_HUMAN (Peroxisome biogenesis factor 1 OS=Homo sapiens GN=PEX1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 36/95 (37.89%), Postives = 57/95 (60.00%), Query Frame = -2
Query:  396 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAV 680
            L Q+DG +    V V+ AT+R D +DPALLRPGRLD+ +  P PD+  +  +  V +  + L+D+VDL+   S  D  + A++ A+   A + A+
Sbjct:  965 LTQLDGVEGLQGVYVLAATSRPDLIDPALLRPGRLDKCVYCPPPDQVSRLEILNVLSDSLPLADDVDLQHVASVTDSFTGADLKALLYNAQLEAL 1059          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: FTSH2_SYNY3 (Cell division protease ftsH homolog 2 OS=Synechocystis sp. (strain PCC 6803) GN=slr1390 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 37/102 (36.27%), Postives = 54/102 (52.94%), Query Frame = -2
Query:  375 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVI 680
            L +MDGF+    + VI ATNR D LD ALLRPGR DR++    PD + + L+  +      L +EV L     R    + A++A +  EA +   R+ +  I
Sbjct:  338 LTEMDGFEGNSGIIVIAATNRPDVLDLALLRPGRFDRQVTVDYPDVQGRELILAIHAQNKKLHEEVQLAAIARRTPGFTGADLANVLNEAAIFTARRRKEAI 439          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: FTSH1_SYNY3 (Cell division protease ftsH homolog 1 OS=Synechocystis sp. (strain PCC 6803) GN=slr0228 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 35/102 (34.31%), Postives = 55/102 (53.92%), Query Frame = -2
Query:  375 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVI 680
            L +MDGF+    + +I ATNR D LD AL+RPGR DR++    PD   ++ + +V      L+ EV ++    R    S A++A +  EA +   R+ +  I
Sbjct:  299 LTEMDGFEGNTGIIIIAATNRPDVLDSALMRPGRFDRQVMVDAPDYSGRKEILEVHARNKKLAPEVSIDSIARRTPGFSGADLANLLNEAAILTARRRKSAI 400          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: SEC18_SCHPO (Vesicular-fusion protein sec18 OS=Schizosaccharomyces pombe GN=sec18 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 40/98 (40.82%), Postives = 57/98 (58.16%), Query Frame = -2
Query:  399 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMN----LSDEVDLEDYVSRPDKISAAEIAAICQEAGMHA 680
            L +MDG DQ  N+ VI  TNR D +D ALLRPGRL+  +E  LPD   +  + ++ T++M     L ++VD+E+  S     S AEIA + + A   A
Sbjct:  406 LAKMDGVDQLNNILVIGMTNRKDMIDEALLRPGRLEVHMEISLPDEHGRLQILKIHTSRMASNGILENDVDMEELASLTKNFSGAEIAGLIKSASSFA 503          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: FTSH8_ORYSJ (Cell division protease ftsH homolog 8, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH8 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = -2
Query:  357 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDL--EDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 680
            L +MDGF  T  V V+  TNR D LD ALLRPGR DR+I    PD + +  +F++   K+ L +E     +   +     + A+IA +C EA + A R     I  + FE
Sbjct:  463 LVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFRIYLKKLKLDNEPSFYSQRLAALTPGFAGADIANVCNEAALIAARSEETQITMQHFE 572          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: FTSH3_ORYSJ (Cell division protease ftsH homolog 3, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH3 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 41/110 (37.27%), Postives = 58/110 (52.73%), Query Frame = -2
Query:  357 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDL--EDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 680
            L +MDGF  T  V V+  TNR D LD ALLRPGR DR+I    PD + +  +F++   K+ L  E     +   +     + A+IA +C EA + A R    +I  + FE
Sbjct:  448 LVEMDGFGTTSGVVVLAGTNRPDILDKALLRPGRFDRQISIDKPDIKGRDQIFRIYLKKLKLDKEPSFYSQRLAALTPGFAGADIANVCNEAALIAARSEGTLITMQHFE 557          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: YB7A_SCHPO (Uncharacterized AAA domain-containing protein C16E9.10c OS=Schizosaccharomyces pombe GN=SPBC16E9.10c PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.194e-12
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = -2
Query:  393 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDK---ISAAEIAAICQEAGMHAVR 680
            L ++DG      V VI ATNR D +DPA+LRPGRLD+ +   LPD  ++  + +  T +  L +EV+L D + R ++    S A++AA+ +EA + A+R
Sbjct:  617 LTELDGLSDRSGVYVIAATNRPDIIDPAMLRPGRLDKTLLVDLPDAHERVEILKTLTKQTPLHEEVNL-DVLGRDERCSNFSGADLAALVREAAVTALR 714          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = -2
Query:  357 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDL--EDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 680
            L +MDG   T +V V+ +TNRAD LD AL+RPGRLDR +   LP  +++R +F+     + L+       +         S A+IA IC EA +HA R+    +   +FE
Sbjct:  437 LVEMDGMGTTDHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTFNFE 546          
The following BLAST results are available for this feature:
BLAST of DN621544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
SPG7_HUMAN2.472e-1238.18Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]
PEX1_MOUSE3.229e-1237.50Peroxisome biogenesis factor 1 OS=Mus musculus GN=... [more]
PEX1_HUMAN4.217e-1237.89Peroxisome biogenesis factor 1 OS=Homo sapiens GN=... [more]
FTSH2_SYNY34.217e-1236.27Cell division protease ftsH homolog 2 OS=Synechocy... [more]
FTSH1_SYNY34.217e-1234.31Cell division protease ftsH homolog 1 OS=Synechocy... [more]
SEC18_SCHPO5.508e-1240.82Vesicular-fusion protein sec18 OS=Schizosaccharomy... [more]
FTSH8_ORYSJ5.508e-1237.27Cell division protease ftsH homolog 8, mitochondri... [more]
FTSH3_ORYSJ5.508e-1237.27Cell division protease ftsH homolog 3, mitochondri... [more]
YB7A_SCHPO7.194e-1239.39Uncharacterized AAA domain-containing protein C16E... [more]
SPG7_MOUSE9.395e-1237.27Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621544 ID=DN621544; Name=DN621544; organism=Citrus sinensis; type=EST; length=681bp
CCAAAAATAATAATAAAATTTAAAAAATACAAACGTACTTGTGCACACTA
GGCCTCGTAAAAATATTAATTCAAAGTCATAATATGGCGCAAAATCAGAC
ATAAATCAAACCATTAATTCAGATTTTTCTGATTTTTAACGCTACTCTAA
CTTAAGCTGGAATATAATGCTCAATGAAGTCTAATAAAGCCATATCACAA
GTTGTGGCGATGCATGACCAATGGCAACGATGTTCATAGTGAGCGAGACA
ATCTGACAAACATTATCAAAGTGATCTTCATAAACTCTTCTAGCCCTCTT
CACTTGTAAAATTCGAAGTCGGTGTCGGGCTTCTTCACATTGGTCCGATA
ACCCTTTTCAAAGTCCTTGGGGAGTATGACATACCTGTTCTTGCGCACAG
CATGCATTCCTGCCTCTTGGCAGATGGCTGCAATCTCAGCAGCACTGATT
TTATCCGGACGGGAAACATAATCCTCCAAGTCTACCTCATCGCTTAAGTT
CATCTTTGCCGTGCAAACCTGAAAAACGAGCCTCTTTTGTCGTCTATCAG
GCAAAGGAAATTCAATTTTTCGGTCAAGCCTTCCAGGACGGAGAAGTGCA
GGGTCCAATGTGTCAGCCCGATTTGTTGCCATGATGACCTTAACATTTAC
AGTCTGATCAAATCCGTCCATCTGATTGAGG
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