DN621544

Overview
NameDN621544
Unique NameDN621544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: NSF_CAEEL (Vesicle-fusing ATPase OS=Caenorhabditis elegans GN=nsf-1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 39/101 (38.61%), Postives = 58/101 (57.43%), Query Frame = -2
Query:  390 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKM----NLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK 680
            L++MDG +Q  N+ VI  TNR D +D ALLRPGRL+ ++E  LPD   +  + ++ TA+M     +   VDLED   R    S AE+  + + A   A+ +
Sbjct:  432 LSKMDGVEQLNNILVIGMTNRRDMIDEALLRPGRLEVQMEVSLPDETGRLQILKIHTARMREYNKMDPNVDLEDISKRTKNFSGAELEGLVRAAQSSAMNR 532          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: FTSH6_ARATH (Cell division protease ftsH homolog 6, chloroplastic OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 39/99 (39.39%), Postives = 54/99 (54.55%), Query Frame = -2
Query:  384 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNR 680
            L +MDGF     V VI ATNR + LD ALLRPGR DR++   LPD R +  + +V +    L  +V L     R    S A++A +  EA + A R+ +
Sbjct:  351 LTEMDGFAGNTGVIVIAATNRPEILDSALLRPGRFDRQVSVGLPDIRGREEILKVHSRSKKLDKDVSLSVIAMRTPGFSGADLANLMNEAAILAGRRGK 449          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: ATD2B_HUMAN (ATPase family AAA domain-containing protein 2B OS=Homo sapiens GN=ATAD2B PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 40/96 (41.67%), Postives = 57/96 (59.38%), Query Frame = -2
Query:  390 MDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMN--LSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRK 671
            MDG D    + VI ATNR D++DPAL RPGR DR+  F LPD++ ++ + Q+ T   N  LSD   L +   +      A+I A+C EA + A+R+
Sbjct:  533 MDGLDNRGEIVVIGATNRLDSIDPALRRPGRFDREFLFNLPDQKARKHILQIHTRDWNPKLSDAF-LGELAEKCVGYCGADIKALCTEAALIALRR 627          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: RCA1_SCHPO (Mitochondrial respiratory chain complexes assembly protein rca1 OS=Schizosaccharomyces pombe GN=SPBC543.09 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 39/111 (35.14%), Postives = 57/111 (51.35%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDL--EDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            L +MDGF  + ++ V   TNR D LDPALLRPGR DR+I    PD   +  +F+V    +  +D +DL  +         + A+I  +C E  + A R N   +    FE+
Sbjct:  424 LVEMDGFTSSEHIVVFAGTNRPDVLDPALLRPGRFDRQITIDRPDIGGREQIFKVHLKHIKAADNIDLIAKRLAVLTSGFTGADIMNVCNEGALIAARSNSNEVQMVHFEQ 534          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: FTSHA_ARATH (Cell division protease ftsH homolog 10, mitochondrial OS=Arabidopsis thaliana GN=FTSH10 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 40/110 (36.36%), Postives = 56/110 (50.91%), Query Frame = -2
Query:  357 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDL--EDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 680
            L +MDGF  T  V V+  TNR D LD ALLRPGR DR+I    PD + +  +FQ+   K+ L  E     +   +     + A+IA +C EA + A R     +    F+
Sbjct:  455 LVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFQIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARHEGATVTMAHFD 564          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: NSF_PONAB (Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 44/127 (34.65%), Postives = 69/127 (54.33%), Query Frame = -2
Query:  324 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMN----LSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYV----ILPKDFEKGYRTNVKKPD 680
            L+++DG +Q  N+ VI  TNR D +D ALLRPGRL+ K+E  LPD + +  +  + TA+M     LS +VD+++        S AE+  + + A   A+  NR++     +  D EK     V + D
Sbjct:  355 LSKIDGVEQLNNILVIGMTNRPDLIDEALLRPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAMETKNFSGAELEGLVRAAQSTAM--NRHIKASTKVEVDMEKAESLQVTRGD 479          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: FTSH_RICBR (Cell division protease ftsH homolog OS=Rickettsia bellii (strain RML369-C) GN=ftsH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 41/109 (37.61%), Postives = 57/109 (52.29%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            L +MDGF+    V +I ATNR D LD ALLRPGR DR+I    PD   +  + QV   K+  S ++            S AE+A +  EA + A R+N+  +   D E+
Sbjct:  282 LVEMDGFEANEGVVIIAATNRPDVLDNALLRPGRFDRQITVSNPDIDGREKILQVHLKKVKYSTKIVPRIIARGTPGFSGAELANLVNEATLIAARRNKKEVEMHDLEE 390          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 40/110 (36.36%), Postives = 56/110 (50.91%), Query Frame = -2
Query:  357 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDL--EDYVSRPDKISAAEIAAICQEAGMHAVRKNRYVILPKDFE 680
            L +MDGF  T  V V+  TNR D LD ALLRPGR DR+I    PD + +  +F++   K+ L  E     +   +     + A+IA +C EA + A R     +    FE
Sbjct:  449 LVEMDGFGTTAGVVVLAGTNRPDILDKALLRPGRFDRQITIDKPDIKGRDQIFKIYLKKIKLDHEPSYYSQRLAALTPGFAGADIANVCNEAALIAARHEGATVTMAHFE 558          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: TBP7_CAEEL (TAT-binding homolog 7 OS=Caenorhabditis elegans GN=lex-1 PE=1 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 40/99 (40.40%), Postives = 55/99 (55.56%), Query Frame = -2
Query:  381 MDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEV--DLEDYVSRPDKISAAEIAAICQEAGMHAVRKNRY 671
            MDG D    V VI ATNR DTLDPAL RPGR DR++ F LPD   +R +  + T+K   +  +   L+    R      A++  +C EA +  +R +RY
Sbjct:  524 MDGLDGRGEVVVIGATNRLDTLDPALRRPGRFDRELRFSLPDLNARRQILDIHTSKWEENKPIPETLDAIAERTSGYCGADLKFLCTEAVLIGLR-SRY 621          
BLAST of DN621544 vs. ExPASy Swiss-Prot
Match: RCA1_YEAST (Mitochondrial respiratory chain complexes assembly protein RCA1 OS=Saccharomyces cerevisiae GN=RCA1 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 41/111 (36.94%), Postives = 61/111 (54.95%), Query Frame = -2
Query:  354 LNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEV-DLEDYVSR-PDKISAAEIAAICQEAGMHAVRKNRYVILPKDFEK 680
            L +MDGF    +V V+  TNR D LD ALLRPGR DR I    P+   ++ +F V    + L+ E+ DL++ ++      S A+IA +C EA + A R +   +    FE+
Sbjct:  476 LVEMDGFTPADHVVVLAGTNRPDILDKALLRPGRFDRHINIDKPELEGRKAIFAVHLHHLKLAGEIFDLKNRLAALTPGFSGADIANVCNEAALIAARSDEDAVKLNHFEQ 586          
The following BLAST results are available for this feature:
BLAST of DN621544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 225
Match NameE-valueIdentityDescription
NSF_CAEEL9.395e-1238.61Vesicle-fusing ATPase OS=Caenorhabditis elegans GN... [more]
FTSH6_ARATH1.227e-1139.39Cell division protease ftsH homolog 6, chloroplast... [more]
ATD2B_HUMAN1.603e-1141.67ATPase family AAA domain-containing protein 2B OS=... [more]
RCA1_SCHPO2.093e-1135.14Mitochondrial respiratory chain complexes assembly... [more]
FTSHA_ARATH2.093e-1136.36Cell division protease ftsH homolog 10, mitochondr... [more]
NSF_PONAB2.734e-1134.65Vesicle-fusing ATPase OS=Pongo abelii GN=NSF PE=2 ... [more]
FTSH_RICBR2.734e-1137.61Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH3_ARATH2.734e-1136.36Cell division protease ftsH homolog 3, mitochondri... [more]
TBP7_CAEEL3.570e-1140.40TAT-binding homolog 7 OS=Caenorhabditis elegans GN... [more]
RCA1_YEAST3.570e-1136.94Mitochondrial respiratory chain complexes assembly... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N18_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621544 ID=DN621544; Name=DN621544; organism=Citrus sinensis; type=EST; length=681bp
CCAAAAATAATAATAAAATTTAAAAAATACAAACGTACTTGTGCACACTA
GGCCTCGTAAAAATATTAATTCAAAGTCATAATATGGCGCAAAATCAGAC
ATAAATCAAACCATTAATTCAGATTTTTCTGATTTTTAACGCTACTCTAA
CTTAAGCTGGAATATAATGCTCAATGAAGTCTAATAAAGCCATATCACAA
GTTGTGGCGATGCATGACCAATGGCAACGATGTTCATAGTGAGCGAGACA
ATCTGACAAACATTATCAAAGTGATCTTCATAAACTCTTCTAGCCCTCTT
CACTTGTAAAATTCGAAGTCGGTGTCGGGCTTCTTCACATTGGTCCGATA
ACCCTTTTCAAAGTCCTTGGGGAGTATGACATACCTGTTCTTGCGCACAG
CATGCATTCCTGCCTCTTGGCAGATGGCTGCAATCTCAGCAGCACTGATT
TTATCCGGACGGGAAACATAATCCTCCAAGTCTACCTCATCGCTTAAGTT
CATCTTTGCCGTGCAAACCTGAAAAACGAGCCTCTTTTGTCGTCTATCAG
GCAAAGGAAATTCAATTTTTCGGTCAAGCCTTCCAGGACGGAGAAGTGCA
GGGTCCAATGTGTCAGCCCGATTTGTTGCCATGATGACCTTAACATTTAC
AGTCTGATCAAATCCGTCCATCTGATTGAGG
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