DN621538

Overview
NameDN621538
Unique NameDN621538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BACCO (3-isopropylmalate dehydrogenase OS=Bacillus coagulans GN=leuB PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.010e-40
Identity = 87/185 (47.03%), Postives = 120/185 (64.86%), Query Frame = 1
Query:  127 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKP---RGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            +  + +LPGDGIGPEV+  A  VLK     +G E  F+   +GG+A+D  G PLPEETL   ++SDA+LLGA+GG KWD N   L+PE GLL +R+ + +FANLRP      L+++S LK+E  E VDL++VRELTGG+YFG+P   RG G  E  + + +  E     E++RI   AF+ A+ R
Sbjct:    2 KMKLAVLPGDGIGPEVMDAAIRVLKTVLDNDGHEAVFENALIGGAAIDEAGTPLPEETLDICRRSDAILLGAVGGPKWDHNPASLRPEKGLLGLRKEMGLFANLRPVKAYATLLNASPLKRERVENVDLVIVRELTGGLYFGRPSERRGPGENEVVDTLAYTRE-----EIERIIEKAFQLAQIR 181          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_RHIEC (3-isopropylmalate dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=leuB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.046e-39
Identity = 80/180 (44.44%), Postives = 116/180 (64.44%), Query Frame = 1
Query:  133 SITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            ++ LLPGDGIGPE +   + ++          F   E  +GG A D  G  + E  +  A  +DAVL GA+GG KWD     ++PE GLL++R+ L++FANLRPA   P L  +S+LK E+ EG+D++++RELTGG+YFG+P+      +G++ G +T+VY  YE++RIA VAFE AR R
Sbjct:    5 NLFLLPGDGIGPEAMGEVRKIIAYMNEAMDAGFVTDEGLVGGCAYDAHGAAISEADMQKALAADAVLFGAVGGPKWDSVPYEVRPEAGLLRLRKDLQLFANLRPAICYPALASASSLKPELVEGLDILIIRELTGGVYFGEPKEIIDLGNGQKRGIDTQVYDTYEIERIAGVAFEMARTR 184          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BRUAB (3-isopropylmalate dehydrogenase OS=Brucella abortus GN=leuB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.046e-39
Identity = 81/179 (45.25%), Postives = 119/179 (66.48%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + LLPGDGIGPE +A  + V+    S   + F  +E  +GG A D  G  + +  +  A  +D+VL GA+GG KWD     ++PE GLL++R+ ++++ANLRPA   P L  SS+LK EV EG+D++++RELTGG+YFG+P+      +G++ G +T+VY  YE++RIA VAFE AR R
Sbjct:    6 LLLLPGDGIGPEAMAEVRKVIAFLNSDLNLGFETEEGLVGGCAYDAHGQAISDADMEKALAADSVLFGAVGGPKWDSVPYEVRPEAGLLRLRKDMQLYANLRPAICYPALAHSSSLKPEVIEGLDILILRELTGGVYFGEPKEIIDLGNGQKRGIDTQVYDTYEIERIADVAFELARTR 184          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BRUA2 (3-isopropylmalate dehydrogenase OS=Brucella abortus (strain 2308) GN=leuB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.046e-39
Identity = 81/179 (45.25%), Postives = 119/179 (66.48%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + LLPGDGIGPE +A  + V+    S   + F  +E  +GG A D  G  + +  +  A  +D+VL GA+GG KWD     ++PE GLL++R+ ++++ANLRPA   P L  SS+LK EV EG+D++++RELTGG+YFG+P+      +G++ G +T+VY  YE++RIA VAFE AR R
Sbjct:    6 LLLLPGDGIGPEAMAEVRKVIAFLNSDLNLGFETEEGLVGGCAYDAHGQAISDADMEKALAADSVLFGAVGGPKWDSVPYEVRPEAGLLRLRKDMQLYANLRPAICYPALAHSSSLKPEVIEGLDILILRELTGGVYFGEPKEIIDLGNGQKRGIDTQVYDTYEIERIADVAFELARTR 184          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_RHIL3 (3-isopropylmalate dehydrogenase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=leuB PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.366e-39
Identity = 80/180 (44.44%), Postives = 116/180 (64.44%), Query Frame = 1
Query:  133 SITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            ++ LLPGDGIGPE +   + ++          F   E  +GG A D  G  + E  +  A  +DAVL GA+GG KWD     ++PE GLL++R+ L++FANLRPA   P L  +S+LK E+ EG+D++++RELTGG+YFG+P+      +G++ G +T+VY  YE++RIA VAFE AR R
Sbjct:    5 NLFLLPGDGIGPEAMGEVRKIIAYMNEAMNAGFVTDEGLVGGCAYDAHGAAISEADMQKALAADAVLFGAVGGPKWDSVPYEVRPEAGLLRLRKDLQLFANLRPAICYPALAAASSLKPELVEGLDILIIRELTGGVYFGEPKEIIDLGNGQKRGIDTQVYDTYEIERIAGVAFEMARTR 184          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_OCEIH (3-isopropylmalate dehydrogenase OS=Oceanobacillus iheyensis GN=leuB PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.785e-39
Identity = 86/179 (48.04%), Postives = 114/179 (63.69%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I LLPGDGIG E+I  AK VL    S     F F+E  +GGSA+D  G PLP++T+ A  ++DA+LLGA+GG KWD N  HL+PE GLL IR+ L +FANLRP   +  L+ +S LK+E+    D++++RELTGGIYFG P     +E       +T  Y+  E++RI    FE AR R
Sbjct:    5 IILLPGDGIGREIIDSAKQVLTAIASEYNHRFTFEEHAIGGSAIDEYGTPLPDKTVDACSKADAILLGAVGGPKWDANPSHLRPEKGLLGIRKQLGLFANLRPVKTISSLLYASPLKEEIVSQADMLIIRELTGGIYFGTP-----SERTTNGVVDTLQYSREEIERIVERGFEAARIR 178          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_YERPS (3-isopropylmalate dehydrogenase OS=Yersinia pseudotuberculosis GN=leuB PE=3 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 3.976e-39
Identity = 89/186 (47.85%), Postives = 123/186 (66.13%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRG-YGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y I +LPGDGIGPEV+A A  VL       G++ +     +GG+A+D  G PLP  T+A  +Q+DA+L G++GG KW+      +PE G LL +R+  K+F+NLRPA +   L D   L+ ++ A G D++ VRELTGGIYFG+P+G  G   H  E  F+TEVY  +E++RIAR+AFE+ARKR
Sbjct:    3 KTYHIAVLPGDGIGPEVMAQASKVLDAVRQRFGLKISTSVYDVGGAAIDRHGSPLPAATVAGCEQADAILFGSVGGPKWEHLPPAEQPERGALLPLRKHFKLFSNLRPARLYQGLEDFCPLRSDIAARGFDILCVRELTGGIYFGQPKGREGQGMH--ERAFDTEVYHRFEIERIARIAFESARKR 186          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_YERPE (3-isopropylmalate dehydrogenase OS=Yersinia pestis GN=leuB PE=3 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 3.976e-39
Identity = 89/186 (47.85%), Postives = 123/186 (66.13%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRG-YGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y I +LPGDGIGPEV+A A  VL       G++ +     +GG+A+D  G PLP  T+A  +Q+DA+L G++GG KW+      +PE G LL +R+  K+F+NLRPA +   L D   L+ ++ A G D++ VRELTGGIYFG+P+G  G   H  E  F+TEVY  +E++RIAR+AFE+ARKR
Sbjct:    3 KTYHIAVLPGDGIGPEVMAQASKVLDAVRQRFGLKISTSVYDVGGAAIDRHGSPLPAATVAGCEQADAILFGSVGGPKWEHLPPAEQPERGALLPLRKHFKLFSNLRPARLYQGLEDFCPLRSDIAARGFDILCVRELTGGIYFGQPKGREGQGMH--ERAFDTEVYHRFEIERIARIAFESARKR 186          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_SODGM (3-isopropylmalate dehydrogenase OS=Sodalis glossinidius (strain morsitans) GN=leuB PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.976e-39
Identity = 88/186 (47.31%), Postives = 122/186 (65.59%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAE-GVDLMVVRELTGGIYFGKPRG-YGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y I +LPGDGIGPEV+A A  +L        +  +  E  +GG+A+D  G PLP  T+A  +Q+DA+L G++GG KW+      +PE G LL +R+  K+F+NLRP+ + P L     L+  +AE G D++ VRELTGGIYFG+P+G  G   H  E  F+TEVY  +E++RIAR+AFE+ARKR
Sbjct:    4 KTYHIAVLPGDGIGPEVMAQAYKILDAVRQRFNVRISTSEYDVGGAAIDRQGSPLPAGTVAGCEQADAILFGSVGGPKWEHLPAAEQPERGALLPLRKHFKLFSNLRPSRLYPGLEAYCPLRANIAERGFDILCVRELTGGIYFGQPKGREGTGPH--EHAFDTEVYYRFEIERIARIAFESARKR 187          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_RALSO (3-isopropylmalate dehydrogenase OS=Ralstonia solanacearum GN=leuB PE=3 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 3.976e-39
Identity = 83/183 (45.36%), Postives = 118/183 (64.48%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEH----GEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIG E++A A  VLK  G      F  +  P+GG+  +  G PLPE+TL  AK++DA+L GA+G +K+D   + L+PE  +L +R+ L++FAN RPA   P+L  +S++K E+  G+D+++VRELTG IYFG+PRG          G   GF+T  Y+  E+ RIA VAF+ A KR
Sbjct:    4 IAVLPGDGIGTEIVAEAVKVLKTLGET----FEMETAPVGGAGYEAKGHPLPEDTLKLAKEADAILFGAVGDWKYDTLPRELRPEQAILGLRKHLQLFANFRPAICYPELAGASSMKPEIVAGLDILIVRELTGDIYFGQPRGVRAAPDGLFAGAREGFDTMRYSEPEIRRIAHVAFQAAAKR 182          
The following BLAST results are available for this feature:
BLAST of DN621538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
LEU3_BACCO8.010e-4047.033-isopropylmalate dehydrogenase OS=Bacillus coagul... [more]
LEU3_RHIEC1.046e-3944.443-isopropylmalate dehydrogenase OS=Rhizobium etli ... [more]
LEU3_BRUAB1.046e-3945.253-isopropylmalate dehydrogenase OS=Brucella abortu... [more]
LEU3_BRUA21.046e-3945.253-isopropylmalate dehydrogenase OS=Brucella abortu... [more]
LEU3_RHIL31.366e-3944.443-isopropylmalate dehydrogenase OS=Rhizobium legum... [more]
LEU3_OCEIH1.785e-3948.043-isopropylmalate dehydrogenase OS=Oceanobacillus ... [more]
LEU3_YERPS3.976e-3947.853-isopropylmalate dehydrogenase OS=Yersinia pseudo... [more]
LEU3_YERPE3.976e-3947.853-isopropylmalate dehydrogenase OS=Yersinia pestis... [more]
LEU3_SODGM3.976e-3947.313-isopropylmalate dehydrogenase OS=Sodalis glossin... [more]
LEU3_RALSO3.976e-3945.363-isopropylmalate dehydrogenase OS=Ralstonia solan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621538 ID=DN621538; Name=DN621538; organism=Citrus sinensis; type=EST; length=674bp
GCGGCGTCAGTGCAGCTGAATGCGAAGCTACTTGGACCCGCGTTTATTGT
TAAACCCGCAACCAAACACTTTCTTAAACCGGCAAGAATCAGGTGCGCCG
CTGCTGCCACCGCACCACCCACCAAACGGTACAGCATCACTCTACTCCCC
GGCGATGGCATCGGCCCCGAAGTCATCGCCGTCGCCAAAAACGTCCTCAA
GCTCGCTGGCTCTCTCGAAGGGATTGAATTTGCATTCCAAGAGATGCCAA
TGGGGGGATCAGCCTTGGATTTGGTTGGAGTTCCGTTACCTGAGGAGACA
CTTGCAGCAGCGAAGCAATCTGATGCAGTTCTACTTGGCGCAATTGGAGG
GTATAAATGGGATAAAAATGAGAAACATTTGAAGCCAGAGACTGGATTGC
TTCAGATTCGAGAAGGTCTTAAAGTCTTTGCAAATTTGAGGCCAGCAACT
GTTTTACCACAGTTAGTGGACTCTTCCACTTTGAAGAAGGAGGTTGCTGA
AGGTGTTGACCTTATGGTTGTAAGGGAGCTCACCGGAGGTATTTATTTTG
GAAAGCCCAGGGGCTATGGTGTTACTGAACATGGTGAGGAGATTGGCTTC
AATACAGAGGTTTATGCTGCCTACGAGGTGGATCGTATTGCTCGTGTTGC
TTTTGAGACTGCTCGGAAACGTCA
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