DN621538

Overview
NameDN621538
Unique NameDN621538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BORPE (3-isopropylmalate dehydrogenase OS=Bordetella pertussis GN=leuB PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.976e-39
Identity = 84/185 (45.41%), Postives = 118/185 (63.78%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEH----GEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + I +LPGDGIGPE++  A+ VLK       +    ++ P+GG+A D    PLP  TL  A+ S AVL GA+G +K+D   +  +PE  +L +R+ L +FANLRPA + P+L  +S+LK E+  G+D++++RELTG IYFG PRG          GE  G++T  YA  EV RIAR+ FE+ARKR
Sbjct:    3 HQIAVLPGDGIGPEIVEQAERVLKALD----LPLELRQAPVGGAAFDQFEHPLPPATLELAQGSHAVLFGAVGDWKYDTLPREFRPEQAILGLRKALGLFANLRPAILYPELASASSLKPEIVSGLDILIIRELTGDIYFGTPRGVRTAADGAFAGEREGYDTMRYAESEVRRIARIGFESARKR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BORPA (3-isopropylmalate dehydrogenase OS=Bordetella parapertussis GN=leuB PE=3 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 3.976e-39
Identity = 84/185 (45.41%), Postives = 118/185 (63.78%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEH----GEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + I +LPGDGIGPE++  A+ VLK       +    ++ P+GG+A D    PLP  TL  A+ S AVL GA+G +K+D   +  +PE  +L +R+ L +FANLRPA + P+L  +S+LK E+  G+D++++RELTG IYFG PRG          GE  G++T  YA  EV RIAR+ FE+ARKR
Sbjct:    3 HQIAVLPGDGIGPEIVEQAERVLKALD----LPLELRQAPVGGAAFDQFEHPLPPATLELAQGSHAVLFGAVGDWKYDTLPREFRPEQAILGLRKALGLFANLRPAILYPELASASSLKPEIVSGLDILIIRELTGDIYFGTPRGVRTAADGAFAGEREGYDTMRYAESEVRRIARIGFESARKR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU32_BORBR (3-isopropylmalate dehydrogenase 2 OS=Bordetella bronchiseptica GN=leuB2 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.976e-39
Identity = 84/185 (45.41%), Postives = 118/185 (63.78%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEH----GEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + I +LPGDGIGPE++  A+ VLK       +    ++ P+GG+A D    PLP  TL  A+ S AVL GA+G +K+D   +  +PE  +L +R+ L +FANLRPA + P+L  +S+LK E+  G+D++++RELTG IYFG PRG          GE  G++T  YA  EV RIAR+ FE+ARKR
Sbjct:    3 HQIAVLPGDGIGPEIVEQAERVLKALD----LPLELRQAPVGGAAFDQFEHPLPPATLELAQGSHAVLFGAVGDWKYDTLPREFRPEQAILGLRKALGLFANLRPAILYPELASASSLKPEIVSGLDILIIRELTGDIYFGTPRGVRTAADGAFAGEREGYDTMRYAESEVRRIARIGFESARKR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_VIBF1 (3-isopropylmalate dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=leuB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.781e-39
Identity = 86/185 (46.49%), Postives = 124/185 (67.03%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAE-GVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y I +LPGDGIGPEV+  A  VL        I F+ ++  +GG A+D  G PLPE T+   ++SDAVL G++GG KW+    + +PE G LL +R+  ++F NLRPA +   L + S L+ +++E G D++VVRELTGGIYFG+P+G    E  +E  ++TE+Y  YE++RIA++AFE+AR R
Sbjct:    4 KTYKIAVLPGDGIGPEVMEQAHKVLDAIEKKHAISFSREQHDVGGIAIDNHGCPLPESTVKGCEESDAVLFGSVGGPKWEHLPPNDQPERGALLPLRKHFQLFCNLRPAQIHKGLENFSPLRADISERGFDIVVVRELTGGIYFGQPKG-REGEGPQEKAYDTEIYHRYEIERIAKIAFESARLR 187          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_ERWCT (3-isopropylmalate dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=leuB PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.157e-38
Identity = 87/185 (47.03%), Postives = 120/185 (64.86%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y I +LPGDGIGPEV+A A  VL       GI     E  +GG A+D  G PLP+ T+A  +Q+DA+L G++GG KW+      +PE G LL +R+  K+F+NLRPA +   L     L+ ++ A+G D++ VRELTGGIYFG+P+G   +   E   F+TEVY  +E++RIA +AFE+ARKR
Sbjct:    3 KSYHIAVLPGDGIGPEVMAQAHKVLDAVRQRFGIRITTSEYDVGGIAIDRQGTPLPQATVAGCEQADAILFGSVGGPKWEHLPPAEQPERGALLPLRKHFKLFSNLRPARLYQGLEAFCPLRSDIAAKGFDILCVRELTGGIYFGQPKGREGSGQYER-AFDTEVYHRFEIERIAHIAFESARKR 186          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BORA1 (3-isopropylmalate dehydrogenase OS=Bordetella avium (strain 197N) GN=leuB PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.157e-38
Identity = 88/184 (47.83%), Postives = 115/184 (62.50%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGY-----GVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE++  A  VL+       +    QE  +GG+A D    PLP  TL  AK S AVL GA+G +K+D   +  +PE  +L +R  L +FANLRPA + P+L  +S+LK E+  G+D++++RELTG IYFG PRG      GV   GE  G++T  YA  EV RIA V FETARKR
Sbjct:    5 IAVLPGDGIGPEIVEQAVRVLQALN----LPLELQEAKVGGAAFDAFEHPLPPATLGLAKSSHAVLFGAVGDWKYDSLPREFRPEQAILGLRRALGLFANLRPAILYPELASASSLKPEIVAGLDIIIIRELTGDIYFGTPRGVRSAPDGVFS-GEREGYDTMRYAESEVRRIAHVGFETARKR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_RHOFD (3-isopropylmalate dehydrogenase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=leuB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.511e-38
Identity = 86/183 (46.99%), Postives = 120/183 (65.57%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGE----EIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIG E++A A  VL        +E A     +GG+A +  G PLP+ TL  AK++DAVL GA+G +K+DK ++ L+PE  +L +R+ L +FAN RPA    QLVD+S+LK E+  G+D++++RELTG IYFG+PRG      G     E  F+T  Y+  E++RIA VAF+ ARKR
Sbjct:    3 IAVLPGDGIGTEIVAEAVKVLNALDLKLEMETAL----VGGAAYEAFGHPLPDATLKLAKEADAVLFGAVGDWKYDKLDRPLRPEQAILGLRKNLGLFANFRPAICYEQLVDASSLKPELIAGLDILIIRELTGDIYFGQPRGRRTATDGHFPGAEEAFDTMRYSRPEIERIAHVAFQAARKR 181          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_VIBVY (3-isopropylmalate dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=leuB PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.973e-38
Identity = 86/185 (46.49%), Postives = 122/185 (65.95%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEVA-EGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y I +LPGDGIGPEV+A A  VL        I F  +E  +GG A+D  G PLP+ T+ A ++SDAVL G++GG KW+    + +PE G LL +R+  ++F NLRPA +   L   S L+ +++  G D++VVRELTGGIYFG+P+G    E   E  ++TE+Y  +E++RIA++AFE+AR R
Sbjct:    4 KTYKIAVLPGDGIGPEVMAQAHKVLDAIEKKHAIHFEREEHDVGGIAIDNHGCPLPQSTVTACEESDAVLFGSVGGPKWEHLPPNDQPERGALLPLRKHFQLFCNLRPAQIHSGLEAFSPLRADISGRGFDIVVVRELTGGIYFGQPKG-REGEGANEKAYDTEIYHRFEIERIAKIAFESARLR 187          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_VIBVU (3-isopropylmalate dehydrogenase OS=Vibrio vulnificus GN=leuB PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.973e-38
Identity = 86/185 (46.49%), Postives = 122/185 (65.95%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEVA-EGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y I +LPGDGIGPEV+A A  VL        I F  +E  +GG A+D  G PLP+ T+ A ++SDAVL G++GG KW+    + +PE G LL +R+  ++F NLRPA +   L   S L+ +++  G D++VVRELTGGIYFG+P+G    E   E  ++TE+Y  +E++RIA++AFE+AR R
Sbjct:    4 KTYKIAVLPGDGIGPEVMAQAHKVLDAIEKKHAIHFEREEHDVGGIAIDNHGCPLPQSTVTACEESDAVLFGSVGGPKWEHLPPNDQPERGALLPLRKHFQLFCNLRPAQIHSGLEAFSPLRADISGRGFDIVVVRELTGGIYFGQPKG-REGEGANEKAYDTEIYHRFEIERIAKIAFESARLR 187          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_RALEJ (3-isopropylmalate dehydrogenase OS=Ralstonia eutropha (strain JMP134) GN=leuB PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.973e-38
Identity = 83/183 (45.36%), Postives = 117/183 (63.93%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTE----HGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE++A A  VL         +F  +  P+GG+  +  G PLPE TL  AK++DA+L GA+G +K+D  E+ L+PE  +L +R+ L++FAN RPA   P+L  +S+LK E+  G+D+++VREL G IYFG+PRG          G   GF+T  Y+  E+ RIA VAF+ A KR
Sbjct:    3 IAVLPGDGIGPEIVAEAVKVLNALDE----KFEMETAPVGGAGYEAEGHPLPENTLKLAKEADAILFGAVGDWKYDSLERALRPEQAILGLRKHLQLFANFRPAICYPELTGASSLKPELVAGLDILIVRELNGDIYFGQPRGVREAPDGLFKGAREGFDTMRYSEPEIRRIAHVAFQAAAKR 181          
The following BLAST results are available for this feature:
BLAST of DN621538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
LEU3_BORPE3.976e-3945.413-isopropylmalate dehydrogenase OS=Bordetella pert... [more]
LEU3_BORPA3.976e-3945.413-isopropylmalate dehydrogenase OS=Bordetella para... [more]
LEU32_BORBR3.976e-3945.413-isopropylmalate dehydrogenase 2 OS=Bordetella br... [more]
LEU3_VIBF16.781e-3946.493-isopropylmalate dehydrogenase OS=Vibrio fischeri... [more]
LEU3_ERWCT1.157e-3847.033-isopropylmalate dehydrogenase OS=Erwinia carotov... [more]
LEU3_BORA11.157e-3847.833-isopropylmalate dehydrogenase OS=Bordetella aviu... [more]
LEU3_RHOFD1.511e-3846.993-isopropylmalate dehydrogenase OS=Rhodoferax ferr... [more]
LEU3_VIBVY1.973e-3846.493-isopropylmalate dehydrogenase OS=Vibrio vulnific... [more]
LEU3_VIBVU1.973e-3846.493-isopropylmalate dehydrogenase OS=Vibrio vulnific... [more]
LEU3_RALEJ1.973e-3845.363-isopropylmalate dehydrogenase OS=Ralstonia eutro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621538 ID=DN621538; Name=DN621538; organism=Citrus sinensis; type=EST; length=674bp
GCGGCGTCAGTGCAGCTGAATGCGAAGCTACTTGGACCCGCGTTTATTGT
TAAACCCGCAACCAAACACTTTCTTAAACCGGCAAGAATCAGGTGCGCCG
CTGCTGCCACCGCACCACCCACCAAACGGTACAGCATCACTCTACTCCCC
GGCGATGGCATCGGCCCCGAAGTCATCGCCGTCGCCAAAAACGTCCTCAA
GCTCGCTGGCTCTCTCGAAGGGATTGAATTTGCATTCCAAGAGATGCCAA
TGGGGGGATCAGCCTTGGATTTGGTTGGAGTTCCGTTACCTGAGGAGACA
CTTGCAGCAGCGAAGCAATCTGATGCAGTTCTACTTGGCGCAATTGGAGG
GTATAAATGGGATAAAAATGAGAAACATTTGAAGCCAGAGACTGGATTGC
TTCAGATTCGAGAAGGTCTTAAAGTCTTTGCAAATTTGAGGCCAGCAACT
GTTTTACCACAGTTAGTGGACTCTTCCACTTTGAAGAAGGAGGTTGCTGA
AGGTGTTGACCTTATGGTTGTAAGGGAGCTCACCGGAGGTATTTATTTTG
GAAAGCCCAGGGGCTATGGTGTTACTGAACATGGTGAGGAGATTGGCTTC
AATACAGAGGTTTATGCTGCCTACGAGGTGGATCGTATTGCTCGTGTTGC
TTTTGAGACTGCTCGGAAACGTCA
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