DN621538

Overview
NameDN621538
Unique NameDN621538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_PELCD (3-isopropylmalate dehydrogenase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=leuB PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.973e-38
Identity = 89/185 (48.11%), Postives = 117/185 (63.24%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K + + +LPGDGIGPE++A A  VL        + F  Q   +GG+A+D  G  LP+ T+   + SDA+L G++GG KWD      +PE G LL +R    +F NLRPA V P L  +S+LK+EV A G D++VVRELTGGIYF +P+G    E GE  GF+T  Y   EV+RI RVAF+ ARKR
Sbjct:    3 KEFKLAVLPGDGIGPEIMAEAMKVLDAVEQKFQVRFERQFANVGGAAIDRDGKALPDATVEICQASDAILFGSVGGPKWDTLPAEERPERGALLPLRRIFGLFCNLRPAIVFPALTSASSLKEEVIAGGFDILVVRELTGGIYFAQPKGV-EGEGGERRGFDTMAYTDAEVERITRVAFDAARKR 186          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_HAEI8 (3-isopropylmalate dehydrogenase OS=Haemophilus influenzae (strain 86-028NP) GN=leuB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.577e-38
Identity = 87/183 (47.54%), Postives = 117/183 (63.93%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            Y++ +L GDGIGPEV+A A  VL       G +  F E  +GG+A+D  G PLP ETL    ++DA+L G++GG KW       +PE G LL +R+  K+F NLRPAT+   L     L+ ++ A+G D++VVRELTGGIYFG+P+G    E  +   F+TEVY  YE++RIAR AFE A KR
Sbjct:    4 YNVAVLAGDGIGPEVMAEAMKVLNKVQEKFGFKLNFNEFFVGGAAIDHCGYPLPAETLKGCDEADAILFGSVGGPKWTNLPPDQQPERGALLPLRKHFKLFCNLRPATLYKGLEKFCPLRADIAAKGFDMVVVRELTGGIYFGQPKG-REGEGSQTKAFDTEVYYKYEIERIARAAFEAAMKR 185          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_CLOPA (3-isopropylmalate dehydrogenase OS=Clostridium pasteurianum GN=leuB PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.365e-38
Identity = 90/185 (48.65%), Postives = 114/185 (61.62%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVA-EGVDLMVVRELTGGIYFGKPRGYGVTE-HGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K + I ++PGDGIGP+++  A  ++   G     +F F E+  GG A+D  G PLP+ET+   K S AVLLGA+GG KWD  E   +PE  LL +R  L ++ANLRPA V   L  +S LK E+  EGVDL+VVREL GGIYFG     G  E +G E  F+TE Y   EV RIA  AF+ A KR
Sbjct:    2 KEFKIAVIPGDGIGPDIVREAVKIMTKVGEKYDTKFNFVEVKAGGDAIDAYGEPLPKETIDVCKSSAAVLLGAVGGPKWDNLEGSKRPERALLGLRGALGLYANLRPAKVYNVLKSASPLKNEIIDEGVDLLVVRELIGGIYFG---DRGTKEVNGVETAFDTEKYNVDEVKRIAHSAFKAAMKR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_MANSM (3-isopropylmalate dehydrogenase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=leuB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.741e-38
Identity = 86/183 (46.99%), Postives = 118/183 (64.48%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            Y++ +LPGDGIGPEV+A A  VL    +  G +  F +  +GG+A+D  G PLP ETL     +DA+L G++GG KW       +PE G LL +R+  K+F NLRPAT+   L     L+ ++ A+G D++VVRELTGGIYFG+P+G    E  +   F+TEVY  YE++RIAR AF+ A KR
Sbjct:    4 YNVAVLPGDGIGPEVMAEAIKVLDKVQAKFGFKLNFTQYLVGGAAIDAKGEPLPAETLQGCDNADAILFGSVGGPKWTHLPPDQQPERGALLPLRKHFKLFCNLRPATLYKGLEKFCPLRADIAAKGFDMVVVRELTGGIYFGQPKGRD-GEGSDTRAFDTEVYYKYEIERIARAAFDAAMKR 185          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_LEPIN (3-isopropylmalate dehydrogenase OS=Leptospira interrogans GN=leuB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.741e-38
Identity = 82/182 (45.05%), Postives = 125/182 (68.68%), Query Frame = 1
Query:  133 SITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKE-VAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            ++ +L GDGIGPEV+ +A +VLK A   +  EF F+E  +GG A+D  G PLP ETL   ++S A+L G++GG KW+      +PE G LL +R+   +FANLRPA + P+L ++S ++ + +  G+D++++RELTGGIYFG+P+G   +   EE  ++T  Y+  E++RIA+VAF+ ARKR
Sbjct:    3 NVAVLSGDGIGPEVMEIAISVLKKALGAKVSEFQFKEGFVGGIAIDKTGHPLPPETLKLCEESSAILFGSVGGPKWETLPPEKQPERGALLPLRKHFDLFANLRPAIIYPELKNASPVRSDIIGNGLDILILRELTGGIYFGQPKGREGSGQ-EEFAYDTMKYSRREIERIAKVAFQAARKR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_LEPIC (3-isopropylmalate dehydrogenase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=leuB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.741e-38
Identity = 82/182 (45.05%), Postives = 125/182 (68.68%), Query Frame = 1
Query:  133 SITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKE-VAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            ++ +L GDGIGPEV+ +A +VLK A   +  EF F+E  +GG A+D  G PLP ETL   ++S A+L G++GG KW+      +PE G LL +R+   +FANLRPA + P+L ++S ++ + +  G+D++++RELTGGIYFG+P+G   +   EE  ++T  Y+  E++RIA+VAF+ ARKR
Sbjct:    3 NVAVLSGDGIGPEVMEIAISVLKKALGAKVSEFQFKEGFVGGIAIDKTGHPLPPETLKLCEESSAILFGSVGGPKWETLPPEKQPERGALLPLRKHFDLFANLRPAIIYPELKNASPVRSDIIGNGLDILILRELTGGIYFGQPKGREGSGQ-EEFAYDTMKYSRREIERIAKVAFQAARKR 183          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_RALME (3-isopropylmalate dehydrogenase OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=leuB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.498e-38
Identity = 82/183 (44.81%), Postives = 117/183 (63.93%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTE----HGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIGPE++A A  VL         +F  +  P+GG+  +  G PLP+ TL  AK++DA+L GA+G +K+D  ++ L+PE  +L +R+ L++FAN RPA   P+L  +S+LK E+  G+D+++VREL G IYFG+PRG          G   GF+T  Y+  EV RIA VAF+ A KR
Sbjct:    3 IAVLPGDGIGPEIVAEAVKVLNALDE----KFEMETAPVGGAGYEAEGHPLPDNTLKLAKEADAILFGAVGDWKYDSLDRPLRPEQAILGLRKHLQLFANFRPAICYPELTGASSLKPELVAGLDILIVRELNGDIYFGQPRGVREAPDGLFKGAREGFDTMRYSEPEVRRIAHVAFQAAAKR 181          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_DESHY (3-isopropylmalate dehydrogenase OS=Desulfitobacterium hafniense (strain Y51) GN=leuB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.498e-38
Identity = 83/180 (46.11%), Postives = 121/180 (67.22%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPET-GLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            I +LPGDGIG E+I  A  VLK   +    EF FQ+ P+GG+A++LVG  LP+ETL   +++DAVLLGA+GG++WD      +PET  LL +R+GL  +AN+RP  ++P L+ +STLK+ V +GVD++V+RELTGG+YFG+    G +++     ++   Y+  E+ RI    FETA  R
Sbjct:    4 IAVLPGDGIGQEIIPQAVRVLKAVLAETDAEFEFQDYPIGGAAIELVGKALPDETLQGCREADAVLLGAVGGHQWDHLPASERPETAALLGLRKGLNFYANIRPVRMIPSLLATSTLKENVLDGVDMVVIRELTGGVYFGEK---GRSDNPRS-AYDKMTYSEEEIRRILIQGFETAMLR 179          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_CANRU (3-isopropylmalate dehydrogenase OS=Candida rugosa GN=LEU2 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.498e-38
Identity = 88/175 (50.29%), Postives = 118/175 (67.43%), Query Frame = 1
Query:  133 SITLLPGDGIGPEVIAVAKNVLK-LAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPAT-VLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVA 651
            SI LLPGD +G EV+A A  VLK +  +  G  F+F    +GG+A+D  GVPLP+E L AAK SDAVLLGA+GG KW   +  ++PE GLL+IR+ L ++ANLRP +    +LVD S LK+E+ EG D +VVREL GGIYFG+ +     + G  +  +TE Y+  EV+RI R+A
Sbjct:    4 SIVLLPGDHVGTEVVAEAVKVLKAIERTTPGTSFSFSTHLIGGAAIDATGVPLPDEALEAAKASDAVLLGAVGGPKWGTGD--VRPEQGLLKIRKELGLYANLRPCSFASSKLVDLSPLKREIVEGTDFVVVRELVGGIYFGERK----EDDGSGVASDTETYSVPEVERITRMA 172          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_HAEIN (3-isopropylmalate dehydrogenase OS=Haemophilus influenzae GN=leuB PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.792e-38
Identity = 88/186 (47.31%), Postives = 118/186 (63.44%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEI---GFNTEVYAAYEVDRIARVAFETARKR 672
            Y+I +L GDGIGPEV+A A  VL       G +  F E  +GG+A++  G PLP ETL    Q+DA+L G++GG KW       +PE G LL +R+  K+F NLRPAT+   L     L+ ++ A+G D++VVRELTGGIYFG+P+G      G+ +    F+TEVY  YE++RIAR AFE A KR
Sbjct:    4 YNIAVLAGDGIGPEVMAEAIKVLNRVQEKFGFKLNFNEFFVGGAAIEHCGYPLPAETLKGCDQADAILFGSVGGPKWTNLPPDQQPERGALLPLRKHFKLFCNLRPATLYKGLEKFCPLRADIAAKGFDMVVVRELTGGIYFGQPKG----REGDGVQTKAFDTEVYYKYEIERIARAAFEAAMKR 185          
The following BLAST results are available for this feature:
BLAST of DN621538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
LEU3_PELCD1.973e-3848.113-isopropylmalate dehydrogenase OS=Pelobacter carb... [more]
LEU3_HAEI82.577e-3847.543-isopropylmalate dehydrogenase OS=Haemophilus inf... [more]
LEU3_CLOPA3.365e-3848.653-isopropylmalate dehydrogenase OS=Clostridium pas... [more]
LEU3_MANSM5.741e-3846.993-isopropylmalate dehydrogenase OS=Mannheimia succ... [more]
LEU3_LEPIN5.741e-3845.053-isopropylmalate dehydrogenase OS=Leptospira inte... [more]
LEU3_LEPIC5.741e-3845.053-isopropylmalate dehydrogenase OS=Leptospira inte... [more]
LEU3_RALME7.498e-3844.813-isopropylmalate dehydrogenase OS=Ralstonia metal... [more]
LEU3_DESHY7.498e-3846.113-isopropylmalate dehydrogenase OS=Desulfitobacter... [more]
LEU3_CANRU7.498e-3850.293-isopropylmalate dehydrogenase OS=Candida rugosa ... [more]
LEU3_HAEIN9.792e-3847.313-isopropylmalate dehydrogenase OS=Haemophilus inf... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621538 ID=DN621538; Name=DN621538; organism=Citrus sinensis; type=EST; length=674bp
GCGGCGTCAGTGCAGCTGAATGCGAAGCTACTTGGACCCGCGTTTATTGT
TAAACCCGCAACCAAACACTTTCTTAAACCGGCAAGAATCAGGTGCGCCG
CTGCTGCCACCGCACCACCCACCAAACGGTACAGCATCACTCTACTCCCC
GGCGATGGCATCGGCCCCGAAGTCATCGCCGTCGCCAAAAACGTCCTCAA
GCTCGCTGGCTCTCTCGAAGGGATTGAATTTGCATTCCAAGAGATGCCAA
TGGGGGGATCAGCCTTGGATTTGGTTGGAGTTCCGTTACCTGAGGAGACA
CTTGCAGCAGCGAAGCAATCTGATGCAGTTCTACTTGGCGCAATTGGAGG
GTATAAATGGGATAAAAATGAGAAACATTTGAAGCCAGAGACTGGATTGC
TTCAGATTCGAGAAGGTCTTAAAGTCTTTGCAAATTTGAGGCCAGCAACT
GTTTTACCACAGTTAGTGGACTCTTCCACTTTGAAGAAGGAGGTTGCTGA
AGGTGTTGACCTTATGGTTGTAAGGGAGCTCACCGGAGGTATTTATTTTG
GAAAGCCCAGGGGCTATGGTGTTACTGAACATGGTGAGGAGATTGGCTTC
AATACAGAGGTTTATGCTGCCTACGAGGTGGATCGTATTGCTCGTGTTGC
TTTTGAGACTGCTCGGAAACGTCA
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