DN621538

Overview
NameDN621538
Unique NameDN621538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_SHISS (3-isopropylmalate dehydrogenase OS=Shigella sonnei (strain Ss046) GN=leuB PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.414e-36
Identity = 84/185 (45.41%), Postives = 118/185 (63.78%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y I +LPGDGIGPEV+  A  VL    +   +        +GG+A+D  G PLP  T+   +Q+DAVL G++GG KW+      +PE G LL +R+  K+F+NLRPA +   L     L+ ++ A G D++ VRELTGGIYFG+P+G   +   E+  F+TEVY  +E++RIAR+AFE+ARKR
Sbjct:    3 KNYHIAVLPGDGIGPEVMTQALKVLNAVRNRFAMRITTSHYDVGGAAIDNHGQPLPPATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKRFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK-AFDTEVYHRFEIERIARIAFESARKR 186          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_SHIBS (3-isopropylmalate dehydrogenase OS=Shigella boydii serotype 4 (strain Sb227) GN=leuB PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.847e-36
Identity = 84/185 (45.41%), Postives = 118/185 (63.78%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y I +LPGDGIGPEV+  A  VL    +   +        +GG+A+D  G PLP  T+   +Q+DAVL G++GG KW+      +PE G LL +R+  K+F+NLRPA +   L     L+ ++ A G D++ VRELTGGIYFG+P+G   +   E+  F+TEVY  +E++RIAR+AFE+ARKR
Sbjct:    3 KNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPPATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK-AFDTEVYHRFEIERIARIAFESARKR 186          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_GEOMG (3-isopropylmalate dehydrogenase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=leuB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.847e-36
Identity = 82/183 (44.81%), Postives = 118/183 (64.48%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + + +LPGDGIGPEV+A A  VL        ++F      +GG+ +DL G  LPE T+   K SDA+L G++GG KW+      +PE G LL +R+   ++ANLRPA + P L  +S+LK+EV A G +++V+RELTGGIYF +P+G    E  + +GF+T  Y+  E++RI  VAF+ ARKR
Sbjct:    5 FKVAVLPGDGIGPEVMAEALRVLDAIEKKYDVKFERTHANVGGAGIDLEGKALPETTITICKTSDAILFGSVGGPKWETLPPDEQPERGALLPLRKIFGLYANLRPAIIFPSLTGASSLKEEVIAGGFNVLVIRELTGGIYFAQPKGI-EGEGRDRVGFDTMRYSVPEIERITHVAFQAARKR 186          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_ECOUT (3-isopropylmalate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=leuB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.847e-36
Identity = 84/185 (45.41%), Postives = 118/185 (63.78%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y I +LPGDGIGPEV+  A  VL    +   +        +GG+A+D  G PLP  T+   +Q+DAVL G++GG KW+      +PE G LL +R+  K+F+NLRPA +   L     L+ ++ A G D++ VRELTGGIYFG+P+G   +   E+  F+TEVY  +E++RIAR+AFE+ARKR
Sbjct:    4 KNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPPATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK-AFDTEVYHRFEIERIARIAFESARKR 187          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_ECOLI (3-isopropylmalate dehydrogenase OS=Escherichia coli (strain K12) GN=leuB PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.847e-36
Identity = 84/185 (45.41%), Postives = 118/185 (63.78%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y I +LPGDGIGPEV+  A  VL    +   +        +GG+A+D  G PLP  T+   +Q+DAVL G++GG KW+      +PE G LL +R+  K+F+NLRPA +   L     L+ ++ A G D++ VRELTGGIYFG+P+G   +   E+  F+TEVY  +E++RIAR+AFE+ARKR
Sbjct:    3 KNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPPATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK-AFDTEVYHRFEIERIARIAFESARKR 186          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_ECOL6 (3-isopropylmalate dehydrogenase OS=Escherichia coli O6 GN=leuB PE=3 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.847e-36
Identity = 84/185 (45.41%), Postives = 118/185 (63.78%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y I +LPGDGIGPEV+  A  VL    +   +        +GG+A+D  G PLP  T+   +Q+DAVL G++GG KW+      +PE G LL +R+  K+F+NLRPA +   L     L+ ++ A G D++ VRELTGGIYFG+P+G   +   E+  F+TEVY  +E++RIAR+AFE+ARKR
Sbjct:    3 KNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPPATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK-AFDTEVYHRFEIERIARIAFESARKR 186          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_ECO57 (3-isopropylmalate dehydrogenase OS=Escherichia coli O157:H7 GN=leuB PE=3 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.847e-36
Identity = 84/185 (45.41%), Postives = 118/185 (63.78%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y I +LPGDGIGPEV+  A  VL    +   +        +GG+A+D  G PLP  T+   +Q+DAVL G++GG KW+      +PE G LL +R+  K+F+NLRPA +   L     L+ ++ A G D++ VRELTGGIYFG+P+G   +   E+  F+TEVY  +E++RIAR+AFE+ARKR
Sbjct:    3 KNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPPATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK-AFDTEVYHRFEIERIARIAFESARKR 186          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BUCUM (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Uroleucon ambrosiae GN=leuB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.847e-36
Identity = 78/185 (42.16%), Postives = 119/185 (64.32%), Query Frame = 1
Query:  127 RYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPE-TGLLQIREGLKVFANLRPATVLPQLVDSSTLKKE--VAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            +Y I++LPGDGIGPEV+  A  +L +  +   +    +E  +GG+A+D  GV LP++TL   + SDA+L G++GG KWD      +PE   LL +R+   +FANLRPA +  +L   S L+ +  +  G +++ +RELTGGIYFGKP G  + ++  E  F+TE+Y  YE++RIA +AF+ A+ R
Sbjct:    4 KYRISVLPGDGIGPEVMREAYKILNILKNHFSLPLEIKEFNIGGAAIDQEGVALPKKTLLGCENSDAILFGSVGGKKWDHLPIDKRPERASLLPLRKHFNLFANLRPAQLYSELKYLSPLRSDIXIKNGFNILCIRELTGGIYFGKPTGRXLKKNNIEYAFDTEIYYDYEINRIAHLAFQLAQTR 188          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BUCAP (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=leuB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.847e-36
Identity = 80/185 (43.24%), Postives = 119/185 (64.32%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPE-TGLLQIREGLKVFANLRPATVLPQLVDSSTLKKE-VAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K++ I +LPGDGIGPEV+  A  +L +      ++   +E  +GG A+D  G+ LPE+TL   + SDA+L G++GG KWD      +PE   LL +R+   +F+NLRPA +   L + S L+ + V +G D++ +RELTGGIYFGKP+G    ++G E  F+TE+Y  +E++RIA +AFE A  R
Sbjct:    3 KKFRIAVLPGDGIGPEVMREAYKILNILERKFFLKLELREFDIGGIAIDREGIALPEKTLRGCENSDAILFGSVGGKKWDYLPIESRPERASLLPLRKHFNLFSNLRPAKLRVDLKNLSPLRSDIVRDGFDILCIRELTGGIYFGKPKGRFKNKNG-EYAFDTEIYYDFEIERIANLAFELASSR 186          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_SHIFL (3-isopropylmalate dehydrogenase OS=Shigella flexneri GN=leuB PE=3 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.412e-36
Identity = 84/185 (45.41%), Postives = 117/185 (63.24%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y I +LPGDGIGPEV+  A  VL    +   +        +GG+A+D  G PLP  T+   +Q+DAVL G++GG KW+      +PE G LL +R+  K+F+NLRPA +   L     L+ ++ A G D+  VRELTGGIYFG+P+G   +   E+  F+TEVY  +E++RIAR+AFE+ARKR
Sbjct:    3 KNYHIAVLPGDGIGPEVMTQALKVLNAVRNRFAMRITTSHYDVGGAAIDNHGQPLPPATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDIQCVRELTGGIYFGQPKGREGSGQYEK-AFDTEVYHRFEIERIARIAFESARKR 186          
The following BLAST results are available for this feature:
BLAST of DN621538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
LEU3_SHISS1.414e-3645.413-isopropylmalate dehydrogenase OS=Shigella sonnei... [more]
LEU3_SHIBS1.847e-3645.413-isopropylmalate dehydrogenase OS=Shigella boydii... [more]
LEU3_GEOMG1.847e-3644.813-isopropylmalate dehydrogenase OS=Geobacter metal... [more]
LEU3_ECOUT1.847e-3645.413-isopropylmalate dehydrogenase OS=Escherichia col... [more]
LEU3_ECOLI1.847e-3645.413-isopropylmalate dehydrogenase OS=Escherichia col... [more]
LEU3_ECOL61.847e-3645.413-isopropylmalate dehydrogenase OS=Escherichia col... [more]
LEU3_ECO571.847e-3645.413-isopropylmalate dehydrogenase OS=Escherichia col... [more]
LEU3_BUCUM1.847e-3642.163-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_BUCAP1.847e-3643.243-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_SHIFL2.412e-3645.413-isopropylmalate dehydrogenase OS=Shigella flexne... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621538 ID=DN621538; Name=DN621538; organism=Citrus sinensis; type=EST; length=674bp
GCGGCGTCAGTGCAGCTGAATGCGAAGCTACTTGGACCCGCGTTTATTGT
TAAACCCGCAACCAAACACTTTCTTAAACCGGCAAGAATCAGGTGCGCCG
CTGCTGCCACCGCACCACCCACCAAACGGTACAGCATCACTCTACTCCCC
GGCGATGGCATCGGCCCCGAAGTCATCGCCGTCGCCAAAAACGTCCTCAA
GCTCGCTGGCTCTCTCGAAGGGATTGAATTTGCATTCCAAGAGATGCCAA
TGGGGGGATCAGCCTTGGATTTGGTTGGAGTTCCGTTACCTGAGGAGACA
CTTGCAGCAGCGAAGCAATCTGATGCAGTTCTACTTGGCGCAATTGGAGG
GTATAAATGGGATAAAAATGAGAAACATTTGAAGCCAGAGACTGGATTGC
TTCAGATTCGAGAAGGTCTTAAAGTCTTTGCAAATTTGAGGCCAGCAACT
GTTTTACCACAGTTAGTGGACTCTTCCACTTTGAAGAAGGAGGTTGCTGA
AGGTGTTGACCTTATGGTTGTAAGGGAGCTCACCGGAGGTATTTATTTTG
GAAAGCCCAGGGGCTATGGTGTTACTGAACATGGTGAGGAGATTGGCTTC
AATACAGAGGTTTATGCTGCCTACGAGGTGGATCGTATTGCTCGTGTTGC
TTTTGAGACTGCTCGGAAACGTCA
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