DN621538

Overview
NameDN621538
Unique NameDN621538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_SHIDS (3-isopropylmalate dehydrogenase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=leuB PE=3 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 3.150e-36
Identity = 84/185 (45.41%), Postives = 117/185 (63.24%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y I  LPGDGIGPEV+  A  VL    +   +        +GG+A+D  G PLP  T+   +Q+DAVL G++GG KW+      +PE G LL +R+  K+F+NLRPA +   L     L+ ++ A G D++ VRELTGGIYFG+P+G   +   E+  F+TEVY  +E++RIAR+AFE+ARKR
Sbjct:    3 KNYHIAALPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYDVGGAAIDNHGQPLPPATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHFKLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK-AFDTEVYHRFEIERIARIAFESARKR 186          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_CAMJR (3-isopropylmalate dehydrogenase OS=Campylobacter jejuni (strain RM1221) GN=leuB PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.150e-36
Identity = 81/185 (43.78%), Postives = 113/185 (61.08%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPE-TGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAE-GVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y + +L GDGIGP V+  A  +L          F F E  +GG+++D  GV L +ETL   +QSDA+L G++GG KWD      +PE   LL +R+   +FANLRP  +   L  +S LK E+ + GVD++ VRELTGGIYFGK       + G+E  ++TE+Y   E++RIA +AFE+AR R
Sbjct:    2 KAYKVAVLAGDGIGPLVMKEALKILTFISQKYNFSFEFNEAKIGGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFNLFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGK------QDLGKESAYDTEIYTKKEIERIAHIAFESARIR 180          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BUCAI (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=leuB PE=3 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.373e-36
Identity = 79/185 (42.70%), Postives = 118/185 (63.78%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPE-TGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAE-GVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K Y I +L GDGIGPEV+  A  +L +      +    Q+  +GG A++  GV LP+ TL   + SD++LLG++GG KWD      +PE   LL +R+   +F+NLRPA + P+L   S L+ ++ + G D++ VRELTGGIYFG+P+G+ V ++  +  F+TE+Y  YE+ RIA +AF+ AR R
Sbjct:    3 KNYRIAVLSGDGIGPEVMQEACKILNVLKKYFFLSLEIQKFNIGGIAIEREGVALPKTTLLGCENSDSILLGSVGGKKWDNLPVEQRPERAALLPLRKHFNLFSNLRPAKLYPELKCLSPLRSDIVKNGFDILCVRELTGGIYFGEPKGF-VNKNNTKYAFDTEIYHEYEIIRIAHLAFKLARSR 186          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_PICAN (3-isopropylmalate dehydrogenase OS=Pichia angusta GN=LEU2 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.017e-36
Identity = 82/174 (47.13%), Postives = 115/174 (66.09%), Query Frame = 1
Query:  133 SITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQ-LVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVA 651
            +I LLPGD +GPEV+A A  VL+   S  G++F F +  +GG+++D  GVPL +E L AAK++DAVLLGA+GG KW      ++PE GLL+IR+ L ++ANLRP +     L+  S LK E+ +G D +VVREL GGIYFG  +     + G+ +  +TE Y+  EV RI R+A
Sbjct:    4 NIVLLPGDHVGPEVVAEAVKVLEAVSSAIGVKFNFSKHLIGGASIDAYGVPLSDEALEAAKKADAVLLGAVGGPKWGTGS--VRPEQGLLKIRKELNLYANLRPCSFASDALLKLSPLKSEIVKGTDFVVVRELVGGIYFGDRK----EDAGDGVASDTESYSVPEVQRITRMA 171          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_GEOSL (3-isopropylmalate dehydrogenase OS=Geobacter sulfurreducens GN=leuB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.017e-36
Identity = 80/183 (43.72%), Postives = 119/183 (65.03%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            + + +LPGDGIGPEV+A A  VL    +   ++F      +GG+ +D+ G  LPE T+   K +DA+L G++GG KW+      +PE G LL +R+   ++ANLRPA + P L  +S+LK+EV A G +++V+RELTGGIYF +P+G    E  + +GF+T  Y+  E++RI  VAF+ ARKR
Sbjct:    5 FKVAVLPGDGIGPEVMAEALRVLDAVEAKYDVKFERTHANVGGAGIDIEGKALPETTVNICKAADAILFGSVGGPKWESLPPDEQPERGALLPLRKIFGLYANLRPAIIFPSLTGASSLKEEVIAGGFNVLVIRELTGGIYFAQPKGI-EGEGRDRVGFDTMRYSVPEIERITHVAFQAARKR 186          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_BUCUD (3-isopropylmalate dehydrogenase OS=Buchnera aphidicola subsp. Uroleucon rudbeckiae GN=leuB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.017e-36
Identity = 79/185 (42.70%), Postives = 119/185 (64.32%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPE-TGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAE-GVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K+Y I +LPGDGIGPEV+  A  +L +  +   +    +E  +GGSA+D  G  LP++TL   + SDA+L G++GG KWD    + +PE   LL +R+   +FANLRPA +  +L   S L+ ++ + G D++ +RELTGG+YFGKP G  + ++  E  F+TE+Y  YE+ RIA +AF+ A+ R
Sbjct:    3 KKYRIAVLPGDGIGPEVMREAYKILNILKNHFSLPLETREFNIGGSAIDQEGTALPKKTLLGCENSDAILFGSVGGKKWDDLPINQRPERASLLPLRKHFNLFANLRPAKLYSELKYLSPLRSDIIKNGFDILCIRELTGGLYFGKPTG-RLKKNNIEYAFDTEIYYNYEITRIAHLAFQLAQTR 186          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_STAAS (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain MSSA476) GN=leuB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.165e-36
Identity = 78/181 (43.09%), Postives = 115/181 (63.54%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            Y+I  LPGDGIGPE++  + ++L++  +     +  +    GG+++D  G PL E+TL A K++DA+LLGAIGG KW   + + +PE GLL++R+ L +FAN+RP TV+      S LK+E  EG DL++VRELT GIYFG+PR +   E       ++  Y   E++RI  VAF+ A  R
Sbjct:    3 YNIVALPGDGIGPEILNGSLSLLEIISNKYNFNYQIEHHEFGGASIDTFGEPLTEKTLNACKRADAILLGAIGGPKW--TDPNNRPEQGLLKLRKSLNLFANIRPTTVVKGASSLSPLKEERVEGTDLVIVRELTSGIYFGEPRHFNNHE-----ALDSLTYTREEIERIVHVAFKLAASR 176          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_STAAN (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain N315) GN=leuB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.165e-36
Identity = 78/181 (43.09%), Postives = 115/181 (63.54%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            Y+I  LPGDGIGPE++  + ++L++  +     +  +    GG+++D  G PL E+TL A K++DA+LLGAIGG KW   + + +PE GLL++R+ L +FAN+RP TV+      S LK+E  EG DL++VRELT GIYFG+PR +   E       ++  Y   E++RI  VAF+ A  R
Sbjct:    3 YNIVALPGDGIGPEILNGSLSLLEIISNKYNFNYQIEHHEFGGASIDTFGEPLTEKTLNACKRADAILLGAIGGPKW--TDPNNRPEQGLLKLRKSLNLFANIRPTTVVKGASSLSPLKEERVEGTDLVIVRELTSGIYFGEPRHFNNHE-----ALDSLTYTREEIERIVHVAFKLAASR 176          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_STAAM (3-isopropylmalate dehydrogenase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=leuB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.165e-36
Identity = 78/181 (43.09%), Postives = 115/181 (63.54%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            Y+I  LPGDGIGPE++  + ++L++  +     +  +    GG+++D  G PL E+TL A K++DA+LLGAIGG KW   + + +PE GLL++R+ L +FAN+RP TV+      S LK+E  EG DL++VRELT GIYFG+PR +   E       ++  Y   E++RI  VAF+ A  R
Sbjct:    3 YNIVALPGDGIGPEILNGSLSLLEIISNKYNFNYQIEHHEFGGASIDTFGEPLTEKTLNACKRADAILLGAIGGPKW--TDPNNRPEQGLLKLRKSLNLFANIRPTTVVKGASSLSPLKEERVEGTDLVIVRELTSGIYFGEPRHFNNHE-----ALDSLTYTREEIERIVHVAFKLAASR 176          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: LEU3_PHOLL (3-isopropylmalate dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=leuB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 9.165e-36
Identity = 85/186 (45.70%), Postives = 119/186 (63.98%), Query Frame = 1
Query:  130 YSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETG-LLQIREGLKVFANLRPATVLPQLVDSSTLKKEV-AEGVDLMVVRELTGGIYFGKPRGYGVTEHGE---EIGFNTEVYAAYEVDRIARVAFETARKR 672
            Y I +LPGDGIGPEV+A A  +L        I     E  +GG A+D  G  LP +T+A  +Q+DA+L G++GG KW+      +PE G LL +R+  K+F+NLRPA +   L     L+ ++ A+G D++ VRELTGGIYFG+P+G      G+   E  F+TEVY  +E++RIAR+AFE+ARKR
Sbjct:    5 YHIAVLPGDGIGPEVMAQAYKILDAIRKRFNICITTSEYDVGGIAIDRHGCSLPAKTVAGCEQADAILFGSVGGPKWEHLPPAEQPERGALLPLRKHFKLFSNLRPARLYAGLEVFCPLRNDIAAKGFDILCVRELTGGIYFGQPKG----REGQGKYERAFDTEVYHRFEIERIARIAFESARKR 186          
The following BLAST results are available for this feature:
BLAST of DN621538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
LEU3_SHIDS3.150e-3645.413-isopropylmalate dehydrogenase OS=Shigella dysent... [more]
LEU3_CAMJR3.150e-3643.783-isopropylmalate dehydrogenase OS=Campylobacter j... [more]
LEU3_BUCAI5.373e-3642.703-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_PICAN7.017e-3647.133-isopropylmalate dehydrogenase OS=Pichia angusta ... [more]
LEU3_GEOSL7.017e-3643.723-isopropylmalate dehydrogenase OS=Geobacter sulfu... [more]
LEU3_BUCUD7.017e-3642.703-isopropylmalate dehydrogenase OS=Buchnera aphidi... [more]
LEU3_STAAS9.165e-3643.093-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_STAAN9.165e-3643.093-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_STAAM9.165e-3643.093-isopropylmalate dehydrogenase OS=Staphylococcus ... [more]
LEU3_PHOLL9.165e-3645.703-isopropylmalate dehydrogenase OS=Photorhabdus lu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621538 ID=DN621538; Name=DN621538; organism=Citrus sinensis; type=EST; length=674bp
GCGGCGTCAGTGCAGCTGAATGCGAAGCTACTTGGACCCGCGTTTATTGT
TAAACCCGCAACCAAACACTTTCTTAAACCGGCAAGAATCAGGTGCGCCG
CTGCTGCCACCGCACCACCCACCAAACGGTACAGCATCACTCTACTCCCC
GGCGATGGCATCGGCCCCGAAGTCATCGCCGTCGCCAAAAACGTCCTCAA
GCTCGCTGGCTCTCTCGAAGGGATTGAATTTGCATTCCAAGAGATGCCAA
TGGGGGGATCAGCCTTGGATTTGGTTGGAGTTCCGTTACCTGAGGAGACA
CTTGCAGCAGCGAAGCAATCTGATGCAGTTCTACTTGGCGCAATTGGAGG
GTATAAATGGGATAAAAATGAGAAACATTTGAAGCCAGAGACTGGATTGC
TTCAGATTCGAGAAGGTCTTAAAGTCTTTGCAAATTTGAGGCCAGCAACT
GTTTTACCACAGTTAGTGGACTCTTCCACTTTGAAGAAGGAGGTTGCTGA
AGGTGTTGACCTTATGGTTGTAAGGGAGCTCACCGGAGGTATTTATTTTG
GAAAGCCCAGGGGCTATGGTGTTACTGAACATGGTGAGGAGATTGGCTTC
AATACAGAGGTTTATGCTGCCTACGAGGTGGATCGTATTGCTCGTGTTGC
TTTTGAGACTGCTCGGAAACGTCA
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