DN621538

Overview
NameDN621538
Unique NameDN621538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length674
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: TTUC_ECOLI (Probable tartrate dehydrogenase/decarboxylase OS=Escherichia coli (strain K12) GN=yeaU PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 60/187 (32.09%), Postives = 82/187 (43.85%), Query Frame = 1
Query:  124 KRYSITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGG-SALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKW-DKNEKHLKPETGLLQIREGLKVFANLRPATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIY--FGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARKR 672
            K   I  +PGDGIG EV+     VL+ A    G   +F++M           G  +P++      + DA+  GA+G   W D    H+     LL+ R     + NLRP  + P +     L  +    +D  VVRE T G Y   G     G TEH  E+     V+    VDRI R AFE A+ R
Sbjct:    3 KTMRIAAIPGDGIGKEVLPEGIRVLQAAAERWGFALSFEQMEWASCEYYSHHGKMMPDDWHEQLSRFDAIYFGAVG---WPDTVPDHISLWGSLLKFRREFDQYVNLRPVRLFPGV--PCPLAGKQPGDIDFYVVRENTEGEYSSLGGRVNEG-TEH--EVVIQESVFTRRGVDRILRYAFELAQSR 181          
BLAST of DN621538 vs. ExPASy Swiss-Prot
Match: AKSF_METJA (Homoisocitrate dehydrogenase OS=Methanocaldococcus jannaschii GN=aksF PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 55/184 (29.89%), Postives = 88/184 (47.83%), Query Frame = 1
Query:  136 ITLLPGDGIGPEVIAVAKNVLKLAGSLEGIEFAFQEMPMGGSALDLVGVPLPEETLAAAKQSDAVLLGAIGGYKWDKNEKHLKPETGLLQIREGLKVFANLRP------ATVLPQLVDSSTLKKEVAEGVDLMVVRELTGGIYFGKPRGYGVTEHGEEIGFNTEVYAAYEVDRIARVAFETARK 669
            + ++ GDGIG EVI  A  +L   G     EF   +   G   L   G  LPE+T+  AK++D +L GAI   K  + + +  P   ++ +R+   ++AN+RP        ++ ++ D   L    A+ +D++++RE T  +Y G+ R    T   E       V      +RI R AFE A K
Sbjct:    4 VCVIEGDGIGKEVIPEAIKILNELG-----EFEIIKGEAGLECLKKYGNALPEDTIEKAKEADIILFGAITSPKPGEVKNYKSP---IITLRKMFHLYANVRPINNFGIGQLIGKIADYEFLN---AKNIDIVIIRENTEDLYVGRERLENDTAIAE------RVITRKGSERIIRFAFEYAIK 170          
The following BLAST results are available for this feature:
BLAST of DN621538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 292
Match NameE-valueIdentityDescription
TTUC_ECOLI3.507e-1132.09Probable tartrate dehydrogenase/decarboxylase OS=E... [more]
AKSF_METJA7.813e-1129.89Homoisocitrate dehydrogenase OS=Methanocaldococcus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06N15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006N15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621538 ID=DN621538; Name=DN621538; organism=Citrus sinensis; type=EST; length=674bp
GCGGCGTCAGTGCAGCTGAATGCGAAGCTACTTGGACCCGCGTTTATTGT
TAAACCCGCAACCAAACACTTTCTTAAACCGGCAAGAATCAGGTGCGCCG
CTGCTGCCACCGCACCACCCACCAAACGGTACAGCATCACTCTACTCCCC
GGCGATGGCATCGGCCCCGAAGTCATCGCCGTCGCCAAAAACGTCCTCAA
GCTCGCTGGCTCTCTCGAAGGGATTGAATTTGCATTCCAAGAGATGCCAA
TGGGGGGATCAGCCTTGGATTTGGTTGGAGTTCCGTTACCTGAGGAGACA
CTTGCAGCAGCGAAGCAATCTGATGCAGTTCTACTTGGCGCAATTGGAGG
GTATAAATGGGATAAAAATGAGAAACATTTGAAGCCAGAGACTGGATTGC
TTCAGATTCGAGAAGGTCTTAAAGTCTTTGCAAATTTGAGGCCAGCAACT
GTTTTACCACAGTTAGTGGACTCTTCCACTTTGAAGAAGGAGGTTGCTGA
AGGTGTTGACCTTATGGTTGTAAGGGAGCTCACCGGAGGTATTTATTTTG
GAAAGCCCAGGGGCTATGGTGTTACTGAACATGGTGAGGAGATTGGCTTC
AATACAGAGGTTTATGCTGCCTACGAGGTGGATCGTATTGCTCGTGTTGC
TTTTGAGACTGCTCGGAAACGTCA
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