DN621236

Overview
NameDN621236
Unique NameDN621236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.059e-23
Identity = 66/170 (38.82%), Postives = 96/170 (56.47%), Query Frame = -2
Query:  239 ANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK-FVTNGQTT---SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 715
            A ISGGH+NPAVTFG F+   +SL R + Y + Q LG+     ++K F  N   T    A  ++ G    + +  EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA     G  +NPA S G A++     +WD+HW++WVGP IG  LA + ++
Sbjct:  106 AGISGGHINPAVTFGLFLARKLSLTRAVFYIVMQCLGAICGAGVVKGFQPNPYQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVF-SATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWDDHWIFWVGPFIGAALAALYHQ 274          
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.059e-23
Identity = 66/170 (38.82%), Postives = 95/170 (55.88%), Query Frame = -2
Query:  239 ANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTN----GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 715
            A ISGGH+NPAVTFG F+   +SL R I Y + Q LG+     ++K        G    A  ++SG    + +  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA     G  +NPA S G A++     +W++HW++WVGP +G  LA I ++
Sbjct:  109 AGISGGHINPAVTFGLFLARKLSLTRAIFYIVMQCLGAICGAGVVKGFQQGLYMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHAWNDHWIFWVGPFVGAALAAIYHQ 277          
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: AQP6_MOUSE (Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.059e-23
Identity = 68/168 (40.48%), Postives = 87/168 (51.79%), Query Frame = -2
Query:  236 VAVGANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG---QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIA-IGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWDNHWVYWVGPLIGGGLAGIVYEF 727
            V +    SG H NPAVT    VG +ISL R + Y  AQL G+T    LL  VT G   +T     + +      AV  E+V+T  LV  V+A+      G     +P A IG  V    L G  F G SMNPA SFGPA++   +  HW++WVGPL G  LA ++Y F
Sbjct:   67 VQISWKTSGAHANPAVTLAYLVGSHISLPRAMAYIAAQLAGATAGAALLYGVTPGGIRETLGVNVVHNSTSTGQAVAVELVLTLQLVLCVFASM----DGRQTLASPAAMIGTSVALGHLIGIYFTGCSMNPARSFGPAVIVGKFAVHWIFWVGPLTGAVLASLIYNF 230          
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: AQP5_HUMAN (Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.059e-23
Identity = 66/168 (39.29%), Postives = 94/168 (55.95%), Query Frame = -2
Query:  218 ISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT--NGQTTSAF-ALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGSLGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALVSWSWD-NHWVYWVGPLIGGGLAGIVYEFFFINQS 709
            +SGGH+NPA+T    VG  ISLLR   Y  AQL+G+     +L  V   N +   A  AL++      A+V E+++TF L   ++A+    +   +G+ A ++IG  V    L G  F G SMNPA SFGPA+V   +   HWV+WVGP++G  LA I+Y +     S
Sbjct:   63 VSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFASTDSRRTSPVGSPA-LSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNS 229          
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23
Identity = 70/175 (40.00%), Postives = 96/175 (54.86%), Query Frame = -2
Query:  242 ANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK--------FVTNGQTTSA--FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVY 715
            A ISGGH+NPAVTFG F+   +SL R + Y + Q LG+     ++K         +  G  T A  +   SG+GA      EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA     G  +NPA S G A++     SWD+HWV+WVGP IG  LA + +
Sbjct:  106 AGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKGSGLGA------EIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYH 273          
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.689e-23
Identity = 70/175 (40.00%), Postives = 96/175 (54.86%), Query Frame = -2
Query:  242 ANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK--------FVTNGQTTSA--FALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVY 715
            A ISGGH+NPAVTFG F+   +SL R + Y + Q LG+     ++K         +  G  T A  +   SG+GA      EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA     G  +NPA S G A++     SWD+HWV+WVGP IG  LA + +
Sbjct:  106 AGISGGHINPAVTFGLFLARKLSLTRALYYIVMQCLGAICGAGVVKGFQPKQYQALGGGANTVAHGYTKGSGLGA------EIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDHSWDDHWVFWVGPFIGAALAALYH 273          
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 64/170 (37.65%), Postives = 95/170 (55.88%), Query Frame = -2
Query:  239 ANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGQTT----SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 715
            A ISGGH+NPAVTFG F+   +SL R + Y + Q LG+     ++K    G        A  ++ G    + +  EI+ TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA     G  +NPA S G A++     +W++HW++WVGP+IG  LA I ++
Sbjct:  107 AGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFMVGPYQRLGGGANVVNPGYTKGDGLGAEIIGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNDEHAWNDHWIFWVGPMIGAALAAIYHQ 275          
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: PIP13_ORYSJ (Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica GN=PIP1-3 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 67/169 (39.64%), Postives = 93/169 (55.03%), Query Frame = -2
Query:  242 ANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTN----GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVY 715
            A ISGGH+NPAVTFG F+   +SL R + Y   Q LG+     ++K        G    A A++ G    + +  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA     G  +NPA S G A+V   + +W +HW++WVGP IG  LA I +
Sbjct:  108 AGISGGHINPAVTFGLFLARKLSLTRAVFYMAMQCLGAICGAGVVKGFQRGLYMGSGGGANAVNPGYTKGDGLGAEIVGTFVLVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVYNRAHAWHDHWIFWVGPFIGAALAAIYH 275          
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 67/170 (39.41%), Postives = 93/170 (54.71%), Query Frame = -2
Query:  239 ANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTN----GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 715
            A ISGGH+NPAVTFG F+   +SL R I Y I Q LG+     ++K        G    A  ++ G    + +  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA     G  +NPA S G A++     +W +HW++WVGP IG  LA I ++
Sbjct:  112 AGISGGHINPAVTFGLFLARKLSLTRAIFYIIMQCLGAICGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWSDHWIFWVGPFIGAALAAIYHQ 280          
BLAST of DN621236 vs. ExPASy Swiss-Prot
Match: PIP12_MAIZE (Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.990e-23
Identity = 66/170 (38.82%), Postives = 94/170 (55.29%), Query Frame = -2
Query:  239 ANISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTN----GQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS----LGTIAPIAIGFIVGANILAGGAFDGASMNPAVSFGPALV---SWSWDNHWVYWVGPLIGGGLAGIVYE 715
            A ISGGH+NPAVTFG F+   +SL R + Y I Q LG+     ++K        G    A  ++ G    + +  EIV TF LVYTV+ +A D K+ +    +  +AP+ IGF V    LA     G  +NPA S G A++     +W++HW++WVGP IG  LA I ++
Sbjct:  109 AGISGGHINPAVTFGLFLARKLSLTRALFYIIMQCLGAVCGAGVVKGFQQGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVF-SATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRDHAWNDHWIFWVGPFIGAALAAIYHQ 277          
The following BLAST results are available for this feature:
BLAST of DN621236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 192
Match NameE-valueIdentityDescription
PIP13_ARATH2.059e-2338.82Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP11_ORYSJ2.059e-2338.82Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
AQP6_MOUSE2.059e-2340.48Aquaporin-6 OS=Mus musculus GN=Aqp6 PE=2 SV=1[more]
AQP5_HUMAN2.059e-2339.29Aquaporin-5 OS=Homo sapiens GN=AQP5 PE=1 SV=1[more]
PIP11_VICFA2.689e-2340.00Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH2.689e-2340.00Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP1_SOLLC5.990e-2337.65Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP13_ORYSJ5.990e-2339.64Aquaporin PIP 1-3 OS=Oryza sativa subsp. japonica ... [more]
PIP13_MAIZE5.990e-2339.41Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]
PIP12_MAIZE5.990e-2338.82Aquaporin PIP1-2 OS=Zea mays GN=PIP1-2 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06H01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621236 ID=DN621236; Name=DN621236; organism=Citrus sinensis; type=EST; length=728bp
TAGAAAACAAAGCCATAGCCNTGGGACTCCATAATTATCGCGATACAATA
ATCCAGCAGCTCATGACGATGGAAACAGATCAACGGCCATAAATTAAACA
CAAATTAAAAATAAAAAGAAAGAACCTCGGTAAAAGCAAATTAAATACAA
CATCCGTGCAAACTCACATAGATGGCAAGCTTTTAGCTTAGTACTCGGTT
GTTGGGAGCTGCTCGTGAGACTGGTTAATGAAGAAGAACTCGTAGACGAT
GCCAGCTAGCCCACCACCGATGAGTGGCCCGACCCAGTAGACCCAGTGGT
TGTCCCAGCTCCAGCTTACCAAAGCTGGCCCGAATGACACTGCTGGGTTC
ATTGAAGCTCCATCAAACGCCCCGCCCGCCAAGATGTTGGCTCCTACAAT
GAAACCAATTGCAATTGGTGCAATTGTCCCCAAGCTTCCCTTCTTTGGGT
CCAGGGCTGTGGCATACACTGTGTACACTAGTCCGAATGTCATCACGATC
TCGAAAACGACTGCGTTCCATGCACCAACTCCAGATGAGAGAGCAAAAGC
AGATGTGGTCTGGCCGTTGGTAACGAACTTAAGAAGCAAGCATGCGACGG
TGGATCCAAGAAGCTGGGCGATCCAGTAGAGGATGCCTCGTAGAAGGGAG
ATGTTACCTCCAACGAAGGCGCCAAAGGTGACAGCAGGATTAACGTGGCC
ACCGGAAATGTTGGCGCCAACGGCGACA
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