DN621146

Overview
NameDN621146
Unique NameDN621146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.960e-43
Identity = 80/125 (64.00%), Postives = 99/125 (79.20%), Query Frame = -3
Query:  342 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 716
            SAGP  ++++ W++TI+GPP S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y T++A+++  AR WT++YA
Sbjct:   82 SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.960e-43
Identity = 80/125 (64.00%), Postives = 99/125 (79.20%), Query Frame = -3
Query:  342 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 716
            SAGP  ++++ W++TI+GPP S Y GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y T++A+++  AR WT++YA
Sbjct:   82 SAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.865e-43
Identity = 79/125 (63.20%), Postives = 98/125 (78.40%), Query Frame = -3
Query:  342 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 716
            SAGP  ++++ W +TI+GPP S Y GGVF + IHF P+YPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y  ++ +++  AR WT++YA
Sbjct:  107 SAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREEHDRIARLWTKRYA 231          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 9.222e-37
Identity = 66/125 (52.80%), Postives = 92/125 (73.60%), Query Frame = -3
Query:  342 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 716
            S G  + +++ W A I GP  +PY GG+F +SI FP DYPFKPPK  F+T ++HPNIN  GSIC++ILK++W+PAL + KVLLSI  LL  PNPDDPLVPEI  ++K ++ +++  AR +T ++A
Sbjct:   28 SIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRAREFTARHA 152          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.127e-34
Identity = 60/125 (48.00%), Postives = 92/125 (73.60%), Query Frame = -3
Query:  342 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYA 716
            SAGP  ++++HW ATI+GP  +PY GG+F + I FP DYPFKPPK+ F+T+++H N+++ G + ++IL++ WSPALTI+KVL +I S+   P P  P +P IA +Y TD+ K++  A+ WT ++A
Sbjct:   57 SAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREKHDEVAKEWTLRFA 181          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBC36_ARATH (Ubiquitin carrier protein E2 36 OS=Arabidopsis thaliana GN=UBC36 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.736e-33
Identity = 67/127 (52.76%), Postives = 88/127 (69.29%), Query Frame = -3
Query:  336 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAMG 716
            SA P  E+M ++   I+GP  SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +K+++A+   TA+ WT+ YA G
Sbjct:   26 SASPSEENMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYASG 152          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.055e-32
Identity = 66/127 (51.97%), Postives = 88/127 (69.29%), Query Frame = -3
Query:  336 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAMG 716
            SA P  ++M ++   I+GP  SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +K+++A+   TA+ WT+ YA G
Sbjct:   26 SASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYASG 152          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.350e-32
Identity = 63/125 (50.40%), Postives = 87/125 (69.60%), Query Frame = -3
Query:  339 AGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 713
            A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++ +G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT++A+   TAR+WT+ YAM
Sbjct:   25 AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.839e-32
Identity = 63/125 (50.40%), Postives = 86/125 (68.80%), Query Frame = -3
Query:  339 AGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 713
            A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT++A+   TAR+WT+ YAM
Sbjct:   25 AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.839e-32
Identity = 63/125 (50.40%), Postives = 86/125 (68.80%), Query Frame = -3
Query:  339 AGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAM 713
            A P   +  ++   I GP DSP+ GG F + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT++A+   TAR+WT+ YAM
Sbjct:   25 AEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
The following BLAST results are available for this feature:
BLAST of DN621146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UB2E3_HUMAN2.960e-4364.00Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN2.960e-4364.00Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UBCD2_DROME3.865e-4363.20Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UBC31_ARATH9.222e-3752.80Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
COP10_ARATH1.127e-3448.00Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBC36_ARATH4.736e-3352.76Ubiquitin carrier protein E2 36 OS=Arabidopsis tha... [more]
UBC35_ARATH1.055e-3251.97Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2N_MACFA2.350e-3250.40Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBE2N_PONAB6.839e-3250.40Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]
UBE2N_MOUSE6.839e-3250.40Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06F01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621146 ID=DN621146; Name=DN621146; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTAAACACGGATAAAATTGCAATCTCATAAGCAGCTTAAAGCT
AGAGCAAACAGTAATTTAAACAGAACTGTTTGAGATACATGGTAAACAAA
TGCGTGCACCCAAGAACATTAAGTCATAAACCACTGATCTTACAAGATCA
ATGTCAACACAAGCAAGCTACAATACAACATCAATCTTGTTTTGATGGAA
GACAGTGCATGAACACCATCTTCAATTATCATTTCCAAAAGGCAAAAACA
AAGACGGAAGACGAGCATATCACACTTCATTTTATACATAAATATTATGT
GATGAAAGACTATGTCCTAGATGATTTCATACTTAGCCCATGGCATACTT
TTGGGTCCAGCTCCTAGCAGTTGATTCATACTTAGCCTTGTCTGTCTTGT
ACATGTGAGCTATTTCTGGCACCAAAGGGTCATCTGGGTTTGGGTCCGTC
AACAATGAACAAATTGAGAGCAATACCTTAGATATAGTGAGGGCAGGACT
CCACTGCTCTTTTAGTATGTCGAGACATATACTGCCATTGCTGTTAATAT
TTGGGTGAAAAACCTTGGTCCTAAACGCGACCTTAGGTGGTTTGAATGGA
TAATCAGGAGGGAAATGGATTGAAACTAGAAATACACCTCCTGCATAAGG
ACTATCTGGGGGGCCCATTATGGTTGCTTGCCAATGAAACATGTCTTCAG
CCACAGGACCAGCACTGC
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