DN621146

Overview
NameDN621146
Unique NameDN621146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.743e-27
Identity = 59/126 (46.83%), Postives = 79/126 (62.70%), Query Frame = -3
Query:  354 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSWT 716
            S  P   ++  W A I GP D+P+ GG F +++ F  DYP KPP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY  +K +Y     E   +SWT
Sbjct:   25 SGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWT 150          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.651e-27
Identity = 53/123 (43.09%), Postives = 78/123 (63.41%), Query Frame = -3
Query:  348 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQK 716
            S  P   ++  W A I GP D+P+  G F ++I F  +YP KPP V F +KVFHPN+ ++G ICLDIL+ +WSP   +S +L SI SLL+DPNP+ P     A +YK ++ +YE   ++  ++
Sbjct:   25 SGAPTDNNIMIWNAVIFGPHDTPFEDGTFKLTIEFTEEYPNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQ 147          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.476e-26
Identity = 54/125 (43.20%), Postives = 79/125 (63.20%), Query Frame = -3
Query:  357 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSW 716
            SA P+ +++  W A I+GP D+PY  G F + + F  DYP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  K++Y     E+  +SW
Sbjct:   25 SASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEDYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKETVEKSW 149          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.287e-26
Identity = 53/125 (42.40%), Postives = 79/125 (63.20%), Query Frame = -3
Query:  357 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSW 716
            SA PVA+++  W A I+GP D+P+  G F + +HF   YP KPP V F +++FHPN+   G +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E +++YK ++ +Y     E+  +SW
Sbjct:   25 SASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEKSW 149          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.294e-26
Identity = 53/125 (42.40%), Postives = 79/125 (63.20%), Query Frame = -3
Query:  357 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSW 716
            SA P+ +++  W A I+GP D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  K++Y     E+  +SW
Sbjct:   25 SASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.294e-26
Identity = 53/125 (42.40%), Postives = 80/125 (64.00%), Query Frame = -3
Query:  357 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSW 716
            SA P+ +++  W A I+GP D+P+  G F + + F   YP KPP+V F +++FHPN+ +NG +CLDIL+ +WSP   ++ VL SI SLL DPN   P   E +++YK ++ +Y     E+  RSW
Sbjct:   25 SASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSW 149          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.294e-26
Identity = 53/125 (42.40%), Postives = 79/125 (63.20%), Query Frame = -3
Query:  357 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSW 716
            SA P+ +++  W A I+GP D+PY  G F + + F  +YP KPP V F +++FHPN+ +NG ICLDIL+ +W+P   ++ +L SI SL  DPNP  P   E A ++K  K++Y     E+  +SW
Sbjct:   25 SASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 5.608e-26
Identity = 56/113 (49.56%), Postives = 75/113 (66.37%), Query Frame = -3
Query:  336 IMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTARSWTQKYAMG 671
            I GPPD+PY GG F++ I  P  YPF PPKV F T+++HPNI+S  G+ICLDILK+ W+ A+T+  VLLS+ +LL    PDDP    +A+ +K     +  TA+ WT  YA G
Sbjct:   43 IAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYAGG 155          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.608e-26
Identity = 52/127 (40.94%), Postives = 80/127 (62.99%), Query Frame = -3
Query:  351 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKY-----ESTARSWTQ 716
            SA PVA+++  W A I+GP D+P+  G F + +HF   YP KPP V F +++FHPN+   G +CLDIL+ +WSP   ++ +L SI SLL DPN   P   E +++Y+ ++ +Y     E+  +SW +
Sbjct:   25 SASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEKSWEE 151          
BLAST of DN621146 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.565e-26
Identity = 53/126 (42.06%), Postives = 78/126 (61.90%), Query Frame = -3
Query:  354 SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKAKYESTAR-----SWT 716
            SA PVA+++  W A I+GP ++P+  G F + + F   YP KPP V F +++FHPN+ S+G +CLDIL+ +WSP   ++ +L S+ SLL DPN   P   E + +YK  + +YE   R     SWT
Sbjct:   25 SASPVADNVLTWNAVIIGPAETPFEDGTFRMVLQFDEQYPNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVRDTVEASWT 150          
The following BLAST results are available for this feature:
BLAST of DN621146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 253
Match NameE-valueIdentityDescription
UBC2_WHEAT1.743e-2746.83Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBCD6_DROME8.651e-2743.09Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_CANGA1.476e-2643.20Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC2_ASPFU3.287e-2642.40Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_YEAST4.294e-2642.40Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_TRIHA4.294e-2642.40Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_ASHGO4.294e-2642.40Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]
UBCD4_DROME5.608e-2649.56Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBC2_EMENI5.608e-2640.94Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_YARLI9.565e-2642.06Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06F01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621146 ID=DN621146; Name=DN621146; organism=Citrus sinensis; type=EST; length=718bp
TTTTTTTTTAAACACGGATAAAATTGCAATCTCATAAGCAGCTTAAAGCT
AGAGCAAACAGTAATTTAAACAGAACTGTTTGAGATACATGGTAAACAAA
TGCGTGCACCCAAGAACATTAAGTCATAAACCACTGATCTTACAAGATCA
ATGTCAACACAAGCAAGCTACAATACAACATCAATCTTGTTTTGATGGAA
GACAGTGCATGAACACCATCTTCAATTATCATTTCCAAAAGGCAAAAACA
AAGACGGAAGACGAGCATATCACACTTCATTTTATACATAAATATTATGT
GATGAAAGACTATGTCCTAGATGATTTCATACTTAGCCCATGGCATACTT
TTGGGTCCAGCTCCTAGCAGTTGATTCATACTTAGCCTTGTCTGTCTTGT
ACATGTGAGCTATTTCTGGCACCAAAGGGTCATCTGGGTTTGGGTCCGTC
AACAATGAACAAATTGAGAGCAATACCTTAGATATAGTGAGGGCAGGACT
CCACTGCTCTTTTAGTATGTCGAGACATATACTGCCATTGCTGTTAATAT
TTGGGTGAAAAACCTTGGTCCTAAACGCGACCTTAGGTGGTTTGAATGGA
TAATCAGGAGGGAAATGGATTGAAACTAGAAATACACCTCCTGCATAAGG
ACTATCTGGGGGGCCCATTATGGTTGCTTGCCAATGAAACATGTCTTCAG
CCACAGGACCAGCACTGC
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