FC922054

Overview
NameFC922054
Unique NameFC922054
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_SHIFL (Iron-binding protein iscA OS=Shigella flexneri GN=iscA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 3 
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            ++TL+DSAA+RV   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105
[Close]
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_SHIDS (Iron-binding protein iscA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=iscA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 3 
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            ++TL+DSAA+RV   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105
[Close]
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_SHIBS (Iron-binding protein iscA OS=Shigella boydii serotype 4 (strain Sb227) GN=iscA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 3 
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            ++TL+DSAA+RV   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105
[Close]
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_ESCF3 (Iron-binding protein iscA OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=iscA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 3 
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            ++TL+DSAA+RV   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105
[Close]
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_ECOSM (Iron-binding protein iscA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 3 
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            ++TL+DSAA+RV   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105
[Close]
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_ECOSE (Iron-binding protein iscA OS=Escherichia coli (strain SE11) GN=iscA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 3 
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            ++TL+DSAA+RV   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105
[Close]
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_ECOLU (Iron-binding protein iscA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 3 
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            ++TL+DSAA+RV   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105
[Close]
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_ECOLI (Iron-binding protein iscA OS=Escherichia coli (strain K12) GN=iscA PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 3 
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            ++TL+DSAA+RV   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105
[Close]
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_ECOLC (Iron-binding protein iscA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=iscA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 3 
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            ++TL+DSAA+RV   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105
[Close]
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_ECOL6 (Iron-binding protein iscA OS=Escherichia coli O6 GN=iscA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 3 
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            ++TL+DSAA+RV   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105
The following BLAST results are available for this feature:
BLAST of FC922054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
ISCA_SHIFL3.066e-2248.08Iron-binding protein iscA OS=Shigella flexneri GN=... [more]
ISCA_SHIDS3.066e-2248.08Iron-binding protein iscA OS=Shigella dysenteriae ... [more]
ISCA_SHIBS3.066e-2248.08Iron-binding protein iscA OS=Shigella boydii serot... [more]
ISCA_ESCF33.066e-2248.08Iron-binding protein iscA OS=Escherichia fergusoni... [more]
ISCA_ECOSM3.066e-2248.08Iron-binding protein iscA OS=Escherichia coli (str... [more]
ISCA_ECOSE3.066e-2248.08Iron-binding protein iscA OS=Escherichia coli (str... [more]
ISCA_ECOLU3.066e-2248.08Iron-binding protein iscA OS=Escherichia coli O17:... [more]
ISCA_ECOLI3.066e-2248.08Iron-binding protein iscA OS=Escherichia coli (str... [more]
ISCA_ECOLC3.066e-2248.08Iron-binding protein iscA OS=Escherichia coli (str... [more]
ISCA_ECOL63.066e-2248.08Iron-binding protein iscA OS=Escherichia coli O6 G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1DA06RM1 SLH Citrus sinensis cDNA clone KN0AAM1DA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922054 ID=FC922054; Name=FC922054; organism=Citrus sinensis; type=EST; length=740bp
AATTTTCTTTTTTTGAAAAAAAAGGAAATTAAATAGAAAAAGATTGCGTG
ACATTTTGGATATGATCGATGGCTTCGTTTCTGGCGCAAGCCGCTGAGAA
AATCGGACCGGCCGTTAGGCGGCAGGCCGTGACGTTAACAGACTCCGCCG
CATCTAGAGTACGTCACCTCCTCCAGCAACGCCAGCGACCTTACCTCAAG
CTCGGCGTCAAGGCCCGTGGCTGCAACGGCTTGTCCTACACCCTCAATTA
CGCCGATGAGAGAGCTAAGTTTGATGAGTTGGTTGAGGATAAGGGTGTGA
AGATACTGATTGATCCAAAAGCTCTCATGCACGTTATTGGGACCAAAATG
GATTTTGTAGATGATAAGCTCAGGTCTGAGTTTGTATTCATTAATCCAAA
CTCTAAAGGGCAGTGTGGTTGTGGTGAATCCTTTATGACAACCAGCAGTA
GTGGAGCGTCTAAGCAGGGTGGAAGCTAGGGATTCTTACAAACTAATAGT
ACATGAAGAATGAACGTAGATGATTCTTTTCCCTGGCTGGCCAAGCATTA
CGCACTTGTCTGAAGGTTGTGAATGAAAGGTAGACATCCTCGGTGAGCTT
TAATGGCAGTTGGAGCAACAGGGGCTTTACTAATTCACGTCCTGGGAATC
ATTGCTGTTTTGCCGTCTACAAACAAATTTGTAAAACTATTGTAGCATTT
TTTTTCCTGGTTTTGACAAAAATACCTTTGTAACCTGATT
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