FC922054

Overview
NameFC922054
Unique NameFC922054
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_ECO27 (Iron-binding protein iscA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=iscA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 3
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            ++TL+DSAA+RV   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_SALNS (Iron-binding protein iscA OS=Salmonella newport (strain SL254) GN=iscA PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.004e-22
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 3
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            ++TL+DSAA+RV   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVNIFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPMAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105          
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_ENTS8 (Iron-binding protein iscA OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=iscA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.595e-21
Identity = 48/104 (46.15%), Postives = 71/104 (68.27%), Query Frame = 3
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            ++TL+D+AA+RV   L  R + + L+LGV+  GC+G++Y L + D     D + EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDTAAARVNAFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDAPQPEDTVFEDKGVKVVVDGKSLQFLNGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_PECCP (Iron-binding protein iscA OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=iscA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.390e-21
Identity = 46/104 (44.23%), Postives = 73/104 (70.19%), Query Frame = 3
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            +++L++SAA RV   +  R +   L+LGV+  GC+G++Y L + D+    D + EDKG+K+++D K+L+++ GT++DFV + L   F F NPNS G+CGCGESF
Sbjct:    2 SISLSESAAQRVSAFIANRGKGLGLRLGVRTSGCSGMAYVLEFVDDLNDGDTVFEDKGIKVIVDGKSLVYLDGTELDFVKEGLNEGFKFNNPNSSGECGCGESF 105          
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_EDWI9 (Iron-binding protein iscA OS=Edwardsiella ictaluri (strain 93-146) GN=iscA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.390e-21
Identity = 48/104 (46.15%), Postives = 73/104 (70.19%), Query Frame = 3
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            ++T++DSAA RV+  L  R +   L+LGVK  GC+G++Y L + D   + D + ED+GVK+++D K+L+++ GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITMSDSAAKRVQTFLTNRGKGLGLRLGVKTSGCSGMAYVLEFVDVLNEDDVVFEDQGVKVIVDGKSLVYLDGTELDFVKEGLNEGFKFNNPNVKNECGCGESF 105          
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_XENNE (Iron-binding protein iscA OS=Xenorhabdus nematophilus GN=iscA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 46/104 (44.23%), Postives = 73/104 (70.19%), Query Frame = 3
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            +++LT+SAA R+   L  R +   L+LGV+  GC+G++Y L +AD   + D++ EDKGVK+++D K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:    2 SISLTESAAQRIVAFLDNRGKGVGLRLGVRTSGCSGMAYVLEFADVVNEEDQVFEDKGVKVIVDGKSILYLDGTELDFVKEGLNEGFKFNNPNVSSECGCGESF 105          
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_PROMH (Iron-binding protein iscA OS=Proteus mirabilis (strain HI4320) GN=iscA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.862e-21
Identity = 48/104 (46.15%), Postives = 73/104 (70.19%), Query Frame = 3
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            +++LT++AA+RVR  L  R +   L+LGV+  GC+G++Y L +AD     D + EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:    2 SISLTEAAANRVRSFLANRGKGEGLRLGVRTSGCSGMAYVLEFADVINDEDTVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVANECGCGESF 105          
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_PHOLL (Iron-binding protein iscA OS=Photorhabdus luminescens subsp. laumondii GN=iscA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20
Identity = 47/104 (45.19%), Postives = 72/104 (69.23%), Query Frame = 3
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            +++LT+SAA RV   L  R +   L+LGV+  GC+G++Y L +AD   + D + EDKGVK+++D K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:    2 SISLTESAAQRVSSFLSHRGKGVGLRLGVRTSGCSGMAYLLEFADMINEDDTVFEDKGVKVIVDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSSECGCGESF 105          
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_ERWCT (Iron-binding protein iscA OS=Erwinia carotovora subsp. atroseptica GN=iscA PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20
Identity = 46/104 (44.23%), Postives = 72/104 (69.23%), Query Frame = 3
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            +++L++SAA RV   +  R +   L+LGV+  GC+G++Y L + D+    D + EDKGVK+++D K+L+++ GT++DFV + L   F F NPN  G+CGCGESF
Sbjct:    2 SISLSESAAQRVSAFIANRGKGLGLRLGVRTSGCSGMAYVLEFVDDLNDGDTVFEDKGVKVIVDGKSLVYLDGTELDFVKEGLNEGFKFNNPNISGECGCGESF 105          
BLAST of FC922054 vs. ExPASy Swiss-Prot
Match: ISCA_YERE8 (Iron-binding protein iscA OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=iscA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.682e-20
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 3
Query:  126 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 434
            +++++DSAA RV   L  R +   L+LGV+  GC+G++Y L + DE    D + EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:    2 SISISDSAAQRVSAFLNNRGKGLGLRLGVRTSGCSGMAYILEFVDEMNDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSSECGCGESF 105          
The following BLAST results are available for this feature:
BLAST of FC922054 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
ISCA_ECO273.066e-2248.08Iron-binding protein iscA OS=Escherichia coli O127... [more]
ISCA_SALNS4.004e-2248.08Iron-binding protein iscA OS=Salmonella newport (s... [more]
ISCA_ENTS82.595e-2146.15Iron-binding protein iscA OS=Enterobacter sakazaki... [more]
ISCA_PECCP3.390e-2144.23Iron-binding protein iscA OS=Pectobacterium caroto... [more]
ISCA_EDWI93.390e-2146.15Iron-binding protein iscA OS=Edwardsiella ictaluri... [more]
ISCA_XENNE9.862e-2144.23Iron-binding protein iscA OS=Xenorhabdus nematophi... [more]
ISCA_PROMH9.862e-2146.15Iron-binding protein iscA OS=Proteus mirabilis (st... [more]
ISCA_PHOLL1.288e-2045.19Iron-binding protein iscA OS=Photorhabdus luminesc... [more]
ISCA_ERWCT1.288e-2044.23Iron-binding protein iscA OS=Erwinia carotovora su... [more]
ISCA_YERE81.682e-2045.19Iron-binding protein iscA OS=Yersinia enterocoliti... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1DA06RM1 SLH Citrus sinensis cDNA clone KN0AAM1DA06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922054 ID=FC922054; Name=FC922054; organism=Citrus sinensis; type=EST; length=740bp
AATTTTCTTTTTTTGAAAAAAAAGGAAATTAAATAGAAAAAGATTGCGTG
ACATTTTGGATATGATCGATGGCTTCGTTTCTGGCGCAAGCCGCTGAGAA
AATCGGACCGGCCGTTAGGCGGCAGGCCGTGACGTTAACAGACTCCGCCG
CATCTAGAGTACGTCACCTCCTCCAGCAACGCCAGCGACCTTACCTCAAG
CTCGGCGTCAAGGCCCGTGGCTGCAACGGCTTGTCCTACACCCTCAATTA
CGCCGATGAGAGAGCTAAGTTTGATGAGTTGGTTGAGGATAAGGGTGTGA
AGATACTGATTGATCCAAAAGCTCTCATGCACGTTATTGGGACCAAAATG
GATTTTGTAGATGATAAGCTCAGGTCTGAGTTTGTATTCATTAATCCAAA
CTCTAAAGGGCAGTGTGGTTGTGGTGAATCCTTTATGACAACCAGCAGTA
GTGGAGCGTCTAAGCAGGGTGGAAGCTAGGGATTCTTACAAACTAATAGT
ACATGAAGAATGAACGTAGATGATTCTTTTCCCTGGCTGGCCAAGCATTA
CGCACTTGTCTGAAGGTTGTGAATGAAAGGTAGACATCCTCGGTGAGCTT
TAATGGCAGTTGGAGCAACAGGGGCTTTACTAATTCACGTCCTGGGAATC
ATTGCTGTTTTGCCGTCTACAAACAAATTTGTAAAACTATTGTAGCATTT
TTTTTCCTGGTTTTGACAAAAATACCTTTGTAACCTGATT
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