DN621028

Overview
NameDN621028
Unique NameDN621028
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621028 vs. ExPASy Swiss-Prot
Match: FTSH3_ARATH (Cell division protease ftsH homolog 3, mitochondrial OS=Arabidopsis thaliana GN=FTSH3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.791e-18
Identity = 53/168 (31.55%), Postives = 93/168 (55.36%), Query Frame = -2
Query:  124 DPVAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 624
            +P+ K++I+PRG A  G   + P+E  L     ++  L +   + LGGR AE+V+ G+  ++TGA ND  +V+++    V  +GFS K+GL++       P         K YS  T  ++D EVR+ V  AY R  +++  H   + ++A+LL+EKE +  ++ + +
Sbjct:  601 EPLLKVTIVPRGTAALGFAQYVPNENLL----MTKEQLFDMTCMTLGGRAAEQVLIGK--ISTGAQNDLEKVTKMTYAQVAVYGFSDKVGLLSF------PPRDDGYDFSKPYSNKTGAIIDEEVRDWVAKAYERTVELVEEHKVKVAEIAELLLEKEVLHQDDLLKI 756          
BLAST of DN621028 vs. ExPASy Swiss-Prot
Match: YME1_SCHPO (Protein YME1 homolog OS=Schizosaccharomyces pombe GN=SPCC965.04c PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.877e-18
Identity = 53/171 (30.99%), Postives = 96/171 (56.14%), Query Frame = -2
Query:  100 KISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAEL 612
            K +I+PRG + G+T   P    ++   ++R      + V +GGR AEE+++G++ +T+GA ND  + ++VAR+MV  FG S +IG V++             +   + S AT  +V++E++ L+E +Y R+  ++ +H   L  LA  L++ E +  EE M+  + G  +L
Sbjct:  549 KATIMPRGSSLGMTISLPD---MDKDSWTREEYLAMLDVTMGGRAAEELLYGKDKITSGAHNDIDKATQVARRMVTEFGMSDRIGPVSL------------EAEMDNLSPATRALVESEIKSLLEASYERSLSLLKSHKKELDALATALVDYEFLTAEE-MNRVVKGDRDL 703          
BLAST of DN621028 vs. ExPASy Swiss-Prot
Match: FTSH_HELPJ (Cell division protease ftsH homolog OS=Helicobacter pylori J99 GN=ftsH PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 57/172 (33.14%), Postives = 91/172 (52.91%), Query Frame = -2
Query:  106 VAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKA 618
            V K+SIIPRG A  G T   P E +    L  +  L  ++ V LGGR AEEV    E ++TGASND  + + + + MV  +G S   GL+ +     N FLG    S +++S  TA+ +D  ++ L+E  Y   KQ ++ + + +  + + L +KE + GE    +  + +A
Sbjct:  451 VNKVSIIPRGMAALGYTLNTPEENKY---LMQKHELIAEIDVLLGGRAAEEVFL--EEISTGASNDLERATDIIKGMVSYYGMSSVSGLMVL-EKQRNAFLGGGYGSSREFSEKTAEEMDLFIKNLLEERYQHVKQTLSDYREAIEIMVKELFDKEVITGERVREIISEYEA 616          
BLAST of DN621028 vs. ExPASy Swiss-Prot
Match: FTSH_TREPA (Cell division protease ftsH homolog OS=Treponema pallidum GN=ftsH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.874e-17
Identity = 57/165 (34.55%), Postives = 90/165 (54.55%), Query Frame = -2
Query:  133 DPVAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEF 624
            D V KI+IIPRG +  G TF  P ++R    + +   L  ++ V L GR AE V FGE  V+TGA ND  + + + R+M+  +G S+K   VA+   G       Q++  ++YS  T   VD EV  ++   Y     ++T   ++L  +A  L+E+ET++ +EF
Sbjct:  417 DKVHKITIIPRGTSALGYTFHIPEDDR---HIVTEQQLLAEVDVLLSGRAAEFVAFGE--VSTGAGNDISRATDIVRKMITDYGMSEKFQNVALTRRGTGYLAEPQLA--REYSECTQQYVDEEVARVLAERYRAVVALLTEKKELLEYIATRLLERETIERDEF 574          
BLAST of DN621028 vs. ExPASy Swiss-Prot
Match: FTSH_HELPY (Cell division protease ftsH homolog OS=Helicobacter pylori GN=ftsH PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 55/161 (34.16%), Postives = 87/161 (54.04%), Query Frame = -2
Query:  139 VAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGE 618
            V K+SIIPRG A  G T   P E +    L  +  L  ++ V LGGR AE+V    E ++TGASND  + + + + MV  +G S   GL+ +     N FLG    S +++S  TA+ +D  ++ L+E  Y   KQ ++ + + +  + + L +KE + GE
Sbjct:  451 VNKVSIIPRGMAALGYTLNTPEENKY---LMQKHELIAEIDVLLGGRAAEDVFL--EEISTGASNDLERATDIIKGMVSYYGMSSVSGLMVL-EKQRNAFLGGGYGSSREFSEKTAEEMDLFIKNLLEERYKHVKQTLSDYREAIEIMVKELFDKEVITGE 605          
BLAST of DN621028 vs. ExPASy Swiss-Prot
Match: FTSH_HELFE (Cell division protease ftsH homolog OS=Helicobacter felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 56/161 (34.78%), Postives = 86/161 (53.42%), Query Frame = -2
Query:  139 VAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGE 618
            V K+SIIPRG A  G T   P E +    L  +  L  ++ V LGGR AE+V   E  ++TGASND  + + + + MV  +G S   GL+ +     N FLG    S +++S   A+ +D+ ++ L+E  Y   KQ ++ + D +  +   L EKE + GE
Sbjct:  457 VNKVSIIPRGMAALGYTLNTPEENKY---LMQKHELIAEIDVLLGGRAAEDVFLQE--ISTGASNDLERATDIIKGMVSYYGMSDVSGLMVL-EKQRNSFLGGGFGSGREFSEKMAEEMDSFIKNLLEERYVHVKQTLSDYKDAIEVMVNELFEKEVITGE 611          
BLAST of DN621028 vs. ExPASy Swiss-Prot
Match: SPG7_RAT (Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 55/168 (32.74%), Postives = 91/168 (54.17%), Query Frame = -2
Query:  124 DPVAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 624
            + V K+SI PR  A  G +   P ++ L    +++  L  +M +ALGGR AE + F    VT+GA +D  +V+R+A  MV++FG +  IG V+   P      G     ++ +S     ++D E R LV  AY   ++++  ++D L  LA  L+EKE ++ E+  +L
Sbjct:  552 EAVMKVSIAPRTNAALGFSQMLPRDQYL----FTKEQLFERMCMALGGRAAEAISFSR--VTSGAQDDLRKVTRIAYSMVKQFGMAPSIGPVSF--PEAQE--GLVGIGRRPFSQGLQQMMDHEARLLVARAYRHTEKVLLDNLDKLQALANALLEKEVINYEDIEAL 709          
BLAST of DN621028 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 54/168 (32.14%), Postives = 91/168 (54.17%), Query Frame = -2
Query:  124 DPVAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 624
            + V K+SI PR  A  G     P ++ L    +++  L  +M +ALGGR +E + F E  VT+GA +D  +V+R+A  MV++FG +  IG ++   P      G     ++ +S     ++D E R LV  AY   ++++  ++D L  LA  L+EKE ++ E+  +L
Sbjct:  589 EAVMKVSITPRTNAALGFAQMLPRDQHL----FTKEQLFERMCMALGGRASEALSFNE--VTSGAQDDLRKVTRIAYSMVKQFGMAPGIGPISF--PEAQE--GLMGIGRRPFSQGLQQMMDHEARLLVAKAYRHTEKVLQDNLDKLQALANALLEKEVINYEDIEAL 746          
BLAST of DN621028 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.690e-15
Identity = 54/168 (32.14%), Postives = 91/168 (54.17%), Query Frame = -2
Query:  124 DPVAKISIIPRGQAG-GLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEFMSL 624
            + V K+SI PR  A  G +   P ++ L    +++  L  +M +ALGGR AE + F    VT+GA +D  +V+R+A  MV++FG +  IG V+   P      G     ++ +S     ++D E + LV  AY   ++++  ++D L  LA  L+EKE ++ E+  +L
Sbjct:  589 EAVMKVSIAPRTNAALGFSQMLPRDQYL----FTKEQLFERMCMALGGRAAEAISFSR--VTSGAQDDLRKVTRIAYSMVKQFGMAPSIGPVSF--PEAQE--GLMGIGRRPFSQGLQQMMDHEAKLLVAKAYRHTEKVLLDNLDKLQALANALLEKEVINYEDIEAL 746          
BLAST of DN621028 vs. ExPASy Swiss-Prot
Match: FTSH7_ARATH (Cell division protease ftsH homolog 7, chloroplastic OS=Arabidopsis thaliana GN=FTSH7 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.884e-14
Identity = 58/188 (30.85%), Postives = 94/188 (50.00%), Query Frame = -2
Query:   94 VAKISIIPR-GQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGEENVTTGASNDFMQVSRVARQMVERFGFSKKIGLVAIGGPGGNPFLGQQMSSQKDYSMATADVVDAEVRELVETAYTRAKQIITTHIDILHKLAQLLIEKETVDGEEF------------MSLFIDGKAELFV 618
            V K+SI+PR G A G T+  P+ E  +  L     L  ++   LGGR AEEV++    ++TGA +D  + + +A + V  +G ++KIG V++    G        S          D+V  EV  L+++A   A  ++  + D+L  L   L EKE V+GEE             +++F++GK EL +
Sbjct:  611 VEKLSILPRTGGALGFTYIPPTSE--DRYLLFIDELLGRLVTLLGGRAAEEVVYSGR-ISTGAFDDIRRATDMAYKAVAEYGLNQKIGPVSVATLSGGGIDDSGGSPWGRDQGKLVDLVQKEVTILLQSALDVALSVVRANPDVLEGLGAQLEEKEKVEGEELQKWLSMVVAPEELAVFVEGKQELLL 795          
The following BLAST results are available for this feature:
BLAST of DN621028 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
FTSH3_ARATH5.791e-1831.55Cell division protease ftsH homolog 3, mitochondri... [more]
YME1_SCHPO9.877e-1830.99Protein YME1 homolog OS=Schizosaccharomyces pombe ... [more]
FTSH_HELPJ2.200e-1733.14Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_TREPA2.874e-1734.55Cell division protease ftsH homolog OS=Treponema p... [more]
FTSH_HELPY8.362e-1734.16Cell division protease ftsH homolog OS=Helicobacte... [more]
FTSH_HELFE8.362e-1734.78Cell division protease ftsH homolog OS=Helicobacte... [more]
SPG7_RAT2.060e-1532.74Paraplegin OS=Rattus norvegicus GN=Spg7 PE=2 SV=1[more]
SPG7_HUMAN2.060e-1532.14Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]
SPG7_MOUSE2.690e-1532.14Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1[more]
FTSH7_ARATH3.884e-1430.85Cell division protease ftsH homolog 7, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06C08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621028 ID=DN621028; Name=DN621028; organism=Citrus sinensis; type=EST; length=628bp
TTTTTTTTTCTAAAATGATAATTTAATTACTTGATTTTACATGGGCATAT
ACAACACGAATCTGAATTCTGATTCTTTCATGTACAATCAGGCAACAAAT
AGCTCAGCTTTTCCATCAATGAAAAGGCTCATAAATTCTTCTCCATCAAC
GGTTTCTTTCTCTATGAGGAGTTGAGCAAGCTTGTGAAGGATGTCAATGT
GGGTTGTGATGATCTGCTTGGCCCTTGTATATGCTGTTTCAACCAATTCT
CTGACCTCTGCATCCACCACATCGGCAGTTGCCATGGAGTAGTCTTTCTG
AGAAGACATTTGTTGACCCAAGAATGGATTTCCACCAGGTCCTCCAATGG
CAACTAGTCCAATTTTCTTGCTAAACCCAAATCTTTCAACCATCTGCCGT
GCTACCCGTGAAACTTGCATGAAGTCATTTGATGCTCCTGTTGTCACATT
TTCCTCGCCAAAAATGACTTCTTCTGCAACCCTTCCACCAAGTGCGACAG
CCATCTGATTCTCCAGGTAGCTCCTGCTGTAAAGTCCAGACTCAAGCCTC
TCTTCACTTGGAGCGAAAAAGGTAAGCCCACCAGCTTGGCCACGAGGAAT
GATGGAAATCTTGGCTACAGGATCATAT
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