DN621012

Overview
NameDN621012
Unique NameDN621012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 35/85 (41.18%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  326 DKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDA 580
            DK VV+D +  WCGPCK IAPKF++ +  YSD  F+K+D +Q ++ +A E G+  +P+F + K+ + ++E+ GA    L  +I A
Sbjct:   18 DKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSE-IAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIKA 101          
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 38/92 (41.30%), Postives = 58/92 (63.04%), Query Frame = 2
Query:  287 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 562
            +K+ F   + AAGDK VV+D    WCGPCK+I P F  L  KYS+V+FL++D + + + +A +  ++ +PTF+  K  + V E +GA  E L
Sbjct:    7 SKEAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVD-DCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKL 97          
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 78.9518 bits (193), Expect = 2.595e-14
Identity = 37/92 (40.22%), Postives = 59/92 (64.13%), Query Frame = 2
Query:  287 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 562
            +K  F   + +AG+K VV+D    WCGPCK+I P F  L++KYS+V+FL++D + + + +A E  ++ +PTF+  K  + V E +GA  E L
Sbjct:    7 SKSAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVD-DCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKL 97          
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.389e-14
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  287 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAID 577
            +K  F   + +AG+K VV+D    WCGPCK+I P F  L++KYS+V+FL++D + + + +A E  ++ +PTF+  K  + V E +GA  E L   I+
Sbjct:    7 SKYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVD-DCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLEATIN 102          
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.389e-14
Identity = 39/97 (40.21%), Postives = 60/97 (61.86%), Query Frame = 2
Query:  287 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAID 577
            +K  F   +  AGDK VV+D    WCGPCK+I P F  L++KYS+V+FL++D + + + +A E  ++ +PTF+  K  + V E +GA  E L   I+
Sbjct:    7 SKAAFQEALDDAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVD-DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102          
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = 2
Query:  314 KAAGDKT-VVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 562
            KA   KT VV+D    WCGPC+ IAP F +LA+K  +V+FLK+D   E KS+A +  I+ +PTF  LK+ K++ +V GAK ++L
Sbjct:   23 KANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVD-TDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDEL 105          
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 4.426e-14
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  287 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAID 577
            +K  F   + +AG+K VV+D    WCGPCK+I P F  L++KYS+V+FL++D + + + +A E  ++ +PTF+  K  + V E +GA  E L   I+
Sbjct:    7 SKYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVD-DCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102          
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 5.781e-14
Identity = 38/103 (36.89%), Postives = 62/103 (60.19%), Query Frame = 2
Query:  266 VGEVTEVNKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAI 574
            VG++TE   +     +  AG K +V+D    WCGPCK+I P F  + +KY DV+F+++D + + + +A    ++ +PTF+  K+N+ V E +GA  E L  AI
Sbjct:    5 VGDLTEFRAE-----LSNAGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVD-DAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAI 101          
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.781e-14
Identity = 35/84 (41.67%), Postives = 55/84 (65.48%), Query Frame = 2
Query:  311 VKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 562
            +KAAG+K VV+D    WCGPCK+I P F  L  K+ DV+F+++D + + + +A    ++ +PTF+  K+ K V+E +GA  E L
Sbjct:   15 LKAAGEKLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVD-DAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKL 97          
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 5.781e-14
Identity = 38/97 (39.18%), Postives = 61/97 (62.89%), Query Frame = 2
Query:  287 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAID 577
            +K  F   + +AG+K VV+D    WCGPCK+I P F  L++KYS+V+FL++D + + + +A E  ++ +PTF+  K  + V E +GA  E L   I+
Sbjct:    7 SKYAFQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVD-DCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATIN 102          
The following BLAST results are available for this feature:
BLAST of DN621012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
TRX1_SCHPO2.595e-1441.18Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIO_RAT2.595e-1441.30Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
THIO_HORSE2.595e-1440.22Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]
THIO_SHEEP3.389e-1439.18Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_MACMU3.389e-1440.21Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
TRXH1_ARATH4.426e-1447.62Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
THIO_PIG4.426e-1439.18Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_OPHHA5.781e-1436.89Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
THIO_CHICK5.781e-1441.67Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
THIO_BOVIN5.781e-1439.18Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06B24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621012 ID=DN621012; Name=DN621012; organism=Citrus sinensis; type=EST; length=673bp
ATTTTTGTTCACTTCACTCTCCACCACAAAAATCAAAATGTCTTTACTCC
AATTCTCCTCCACCACCGTCCGATCTCCGACGTCGGTACCGTGCTCCGGG
AATCACCAGATCACAGCCTCTGCTTTCTCAGCGGGAGTCTCAAGCTCAAG
AACCGGCTCTTACTCCTCGTCATTAGTAGCGAAGAAGGCGAATAAGAAGA
GCAATAAGCAGCTAAACGGCGGTGTTTTCACGGTGAGATCGAGCTTGGAG
ATTGCGGGGGCCACAGTGGGAGAGGTCACTGAAGTAAATAAGGATACTTT
TTGGCCCATCGTTAAGGCCGCCGGTGATAAGACTGTTGTTCTTGATATGT
ACACTCAATGGTGTGGTCCTTGTAAAGTGATAGCTCCAAAATTTCAAGAA
TTGGCCCAAAAGTACTCCGATGTTATATTTCTAAAGCTTGATTGCAACCA
AGAGAACAAGTCATTGGCGAAAGAGCTTGGAATAAGGGTTGTTCCTACTT
TCAAGATTCTGAAAGACAATAAGGTTGTAAAGGAAGTGACGGGGGCCAAA
TTGGAAGACCTAGTTTTCGCCATTGATGCTGTTAGATCCAGTTGAAAATT
CTTTCCTATTATTTCTCCTGTAAACTATAAACAATATGATCAACAGTGTG
TACGTGCTTGAGAATAATTGATT
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