DN621012

Overview
NameDN621012
Unique NameDN621012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.550e-14
Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = 2
Query:  260 ATVGEVTEVNKDTFWPI---VKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKY-SDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 562
            A  G+V   ++   W +        +K +V+D    WC PC++IAP F +LA+K+ S  IF K+D + E +++A+E G+  +PTF ++KD  VV +V GA+ EDL
Sbjct:    3 AEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVD-ELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDL 106          
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 2
Query:  287 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFK-ILKDNKVVKEVTGAKLEDLVFAID 577
            +K  F   + AAGDK VV+D    WCGPCK+I P F  L++KYS+VIFL++D + + + +A E  ++ +PTF+   K  + V E +GA  E L   I+
Sbjct:    7 SKTAFQEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVD-DCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKLEATIN 103          
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 35/88 (39.77%), Postives = 57/88 (64.77%), Query Frame = 2
Query:  329 KTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDAVRSS 592
            + V +D    WCGPC+VI P F EL++K+ ++ FLK+D + E + +A+E  +  +PTF  +KD K V +V GAK +DL   + A+ ++
Sbjct:   27 RLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVD-ELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKVAALAAA 113          
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 2
Query:  290 KDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKE-VTGA 547
            K  F   +K AGDK VV+D    WCGPC+ IAPK+ E+A+++ DVIF K+D + EN   A+   I+ +PTFK  K  K + + V GA
Sbjct:    8 KADFDQALKDAGDKLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVD-ENDETAEAEKIQAMPTFKFYKSGKALSDYVQGA 93          
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 2
Query:  287 NKDTFWPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSD-VIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 562
            NKD     +  A DK VV+D Y  WCGPCK+IAPK  ELA +YSD V+ LK++ + EN+ +  E  +  +PTF  +K   V++   G   + L
Sbjct:    7 NKDDLDQQLILAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVD-ENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKL 98          
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 2
Query:  260 ATVGEVTEVNKDTFWPIV---KAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKY-SDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 562
            A  G+V   + +  W +        +K +V+D    WC PC++IAP F +LA+K+ S  IF K+D + E +S+AKE G+  +PTF  +K  +VV ++ GA  EDL
Sbjct:    3 AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVD-ELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDL 106          
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 2
Query:  260 ATVGEVTEVNKDTFWP--IVKAAGDKT-VVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 562
            A  G+V  V+    W   + K   DK  +V+D    WCGPCK IA  + ELA+K   V FLK+D + E KS+A +  +  +PTF  LK+ K+V +V GAK ++L
Sbjct:    2 AEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVD-ELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDEL 104          
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.391e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  287 NKDTF---WPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 562
            NKD F       K AG K V++D    WCGPC+ IAP F E A+K+   +FLK+D + E K +A++  +  +PTF  +KD     +V GA+ +DL
Sbjct:   13 NKDEFDAQMTKAKEAG-KVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVD-ELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDL 105          
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.391e-13
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  287 NKDTF---WPIVKAAGDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 562
            NKD F       K AG K V++D    WCGPC+ IAP F E A+K+   +FLK+D + E K +A++  +  +PTF  +KD     +V GA+ +DL
Sbjct:   13 NKDEFDAQMTKAKEAG-KVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVD-ELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDL 105          
BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.391e-13
Identity = 37/83 (44.58%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  335 VVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDLVFAIDAV 583
            VV+D +  WCGPCK IAP  ++ AQ Y+D  F ++D + E   +A ELGIR +PTF + KD + V +V GA    L   I A+
Sbjct:   27 VVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVD-ELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGALEAGIKAL 108          
The following BLAST results are available for this feature:
BLAST of DN621012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
TRXH2_BRANA7.550e-1438.10Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
THIO_PONAB9.860e-1441.84Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
TRXH_PICMA1.682e-1339.77Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
THIO_GEOCY2.197e-1345.98Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]
THIOT_DROME2.197e-1341.94Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
TRXH4_ARATH4.894e-1338.10Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_TOBAC4.894e-1341.35Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH_ORYSJ6.391e-1341.05Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI6.391e-1341.05Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
THIO_EMENI6.391e-1344.58Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06B24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621012 ID=DN621012; Name=DN621012; organism=Citrus sinensis; type=EST; length=673bp
ATTTTTGTTCACTTCACTCTCCACCACAAAAATCAAAATGTCTTTACTCC
AATTCTCCTCCACCACCGTCCGATCTCCGACGTCGGTACCGTGCTCCGGG
AATCACCAGATCACAGCCTCTGCTTTCTCAGCGGGAGTCTCAAGCTCAAG
AACCGGCTCTTACTCCTCGTCATTAGTAGCGAAGAAGGCGAATAAGAAGA
GCAATAAGCAGCTAAACGGCGGTGTTTTCACGGTGAGATCGAGCTTGGAG
ATTGCGGGGGCCACAGTGGGAGAGGTCACTGAAGTAAATAAGGATACTTT
TTGGCCCATCGTTAAGGCCGCCGGTGATAAGACTGTTGTTCTTGATATGT
ACACTCAATGGTGTGGTCCTTGTAAAGTGATAGCTCCAAAATTTCAAGAA
TTGGCCCAAAAGTACTCCGATGTTATATTTCTAAAGCTTGATTGCAACCA
AGAGAACAAGTCATTGGCGAAAGAGCTTGGAATAAGGGTTGTTCCTACTT
TCAAGATTCTGAAAGACAATAAGGTTGTAAAGGAAGTGACGGGGGCCAAA
TTGGAAGACCTAGTTTTCGCCATTGATGCTGTTAGATCCAGTTGAAAATT
CTTTCCTATTATTTCTCCTGTAAACTATAAACAATATGATCAACAGTGTG
TACGTGCTTGAGAATAATTGATT
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