DN621012

Overview
NameDN621012
Unique NameDN621012
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN621012 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.982e-11
Identity = 34/86 (39.53%), Postives = 56/86 (65.12%), Query Frame = 2 
Query:  311 VKAA--GDKTVVLDMYTQWCGPCKVIAPKFQELAQKYSDVIFLKLDCNQENKSLAKELGIRVVPTFKILKDNKVVKEVTGAKLEDL 562
            +KAA   +K +V+D    WC PC+ IAP F ELA+K+ DV+F K+D + E  ++A+E  ++ +PTF  +K  + + +V GA  E++
Sbjct:   26 LKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVD-ELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEI 110
The following BLAST results are available for this feature:
BLAST of DN621012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
TRXH1_BRANA5.982e-1139.53Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06B24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN621012 ID=DN621012; Name=DN621012; organism=Citrus sinensis; type=EST; length=673bp
ATTTTTGTTCACTTCACTCTCCACCACAAAAATCAAAATGTCTTTACTCC
AATTCTCCTCCACCACCGTCCGATCTCCGACGTCGGTACCGTGCTCCGGG
AATCACCAGATCACAGCCTCTGCTTTCTCAGCGGGAGTCTCAAGCTCAAG
AACCGGCTCTTACTCCTCGTCATTAGTAGCGAAGAAGGCGAATAAGAAGA
GCAATAAGCAGCTAAACGGCGGTGTTTTCACGGTGAGATCGAGCTTGGAG
ATTGCGGGGGCCACAGTGGGAGAGGTCACTGAAGTAAATAAGGATACTTT
TTGGCCCATCGTTAAGGCCGCCGGTGATAAGACTGTTGTTCTTGATATGT
ACACTCAATGGTGTGGTCCTTGTAAAGTGATAGCTCCAAAATTTCAAGAA
TTGGCCCAAAAGTACTCCGATGTTATATTTCTAAAGCTTGATTGCAACCA
AGAGAACAAGTCATTGGCGAAAGAGCTTGGAATAAGGGTTGTTCCTACTT
TCAAGATTCTGAAAGACAATAAGGTTGTAAAGGAAGTGACGGGGGCCAAA
TTGGAAGACCTAGTTTTCGCCATTGATGCTGTTAGATCCAGTTGAAAATT
CTTTCCTATTATTTCTCCTGTAAACTATAAACAATATGATCAACAGTGTG
TACGTGCTTGAGAATAATTGATT
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