DN620945

Overview
NameDN620945
Unique NameDN620945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP11_ORYSJ (Expansin-A11 OS=Oryza sativa subsp. japonica GN=EXPA11 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 6.153e-50
Identity = 90/125 (72.00%), Postives = 105/125 (84.00%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 376
            FD+++P F  IAQ RAGVVPV Y+RV C ++GGIRFTI GHSYFNLVL+TNVGGAGDV AVS+KGSR+GWQ MS NWG NWQ+   L+GQ LSF+VT SDGRTVTS NVAP+ WSFG+T+SG QF
Sbjct:  124 FDMAEPAFTRIAQARAGVVPVQYRRVACAKQGGIRFTITGHSYFNLVLVTNVGGAGDVTAVSVKGSRSGWQAMSHNWGANWQNGANLDGQPLSFRVTASDGRTVTSDNVAPSGWSFGQTFSGGQF 248          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXPA5_ORYSJ (Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.338e-49
Identity = 88/126 (69.84%), Postives = 107/126 (84.92%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRT-GWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 376
            FD+SQPVFQ IA ++AG+VPV+Y+RV C ++GGIRFTINGHSYFNLVL+TNVGGAGDVHAV++K  R+  WQ +SRNWGQNWQS   L+GQ+LSF+VTT DGR+V S N  P  WSFG+T+SGAQF
Sbjct:  165 FDMSQPVFQRIALFKAGIVPVSYRRVACQKKGGIRFTINGHSYFNLVLVTNVGGAGDVHAVAVKSERSAAWQALSRNWGQNWQSAALLDGQALSFRVTTGDGRSVVSNNAVPRGWSFGQTFSGAQF 290          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.054e-49
Identity = 88/126 (69.84%), Postives = 104/126 (82.54%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 379
            FDL+ PVF  IAQYRAG+VPV+Y+RVPC +RGGIRFTINGH YFNLVLITNV GAGD+   S+KGSRTGW  +SRNWGQNWQSN  L GQ+LSF+VT SD RT TS+N+ P++W FG+T+ G  FR
Sbjct:  131 FDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLVLITNVAGAGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNWQFGQTFVGKNFR 256          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXPA7_ORYSJ (Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXPA7 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 3.988e-49
Identity = 86/126 (68.25%), Postives = 104/126 (82.54%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 379
            FDL+ P+F HIA+YRAG+VPV+Y+RVPC ++GG+RFTING  YFNLVLITNV GAGD+   S+KG+ TGW PMSRNWGQNWQSN+ L GQ+LSF+VT SD RT TS+N APA W FG+T+ G  FR
Sbjct:  138 FDLAMPMFLHIAEYRAGIVPVSYRRVPCRKKGGVRFTINGFRYFNLVLITNVAGAGDIVRASVKGTSTGWMPMSRNWGQNWQSNSVLVGQALSFRVTGSDRRTSTSWNAAPAGWHFGQTFEGKNFR 263          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 5.759e-48
Identity = 84/126 (66.67%), Postives = 104/126 (82.54%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 379
            FDL+ PVF  IA+YRAG+VP++Y+RV C + GGIRFTINGH YFNLVLITNV GAGD+   S+KGS+TGW  ++RNWGQNWQSN  L GQSLSF+VT+SD RT TS+N+AP++W FG+T+ G  FR
Sbjct:  134 FDLAMPVFLKIAEYRAGIVPISYRRVACRKSGGIRFTINGHRYFNLVLITNVAGAGDIARTSVKGSKTGWMSLTRNWGQNWQSNAVLVGQSLSFRVTSSDRRTSTSWNIAPSNWQFGQTFVGKNFR 259          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 9.824e-48
Identity = 85/126 (67.46%), Postives = 104/126 (82.54%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 379
            FDL+ P+F  IA+Y+AG+VPV+Y+R+PC ++GGIRFTING  YFNLVL+TNV GAGDV  VS+KGS T W  +SRNWGQNWQSN  L GQSLSF+V TSDGR+ TS N+AP++W FG+TYSG  FR
Sbjct:  132 FDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKGGIRFTINGFKYFNLVLVTNVAGAGDVIKVSVKGSNTQWLDLSRNWGQNWQSNALLVGQSLSFRVKTSDGRSSTSNNIAPSNWQFGQTYSGKNFR 257          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.283e-47
Identity = 85/128 (66.41%), Postives = 107/128 (83.59%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIK---GSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 376
            FDLSQP F  IA++++G+VPV+Y+RV C R+GG+RFTINGHSYFNLVL++NVGGAGDVHAV++K   G +  WQ M+RNWGQNWQS   L+GQ+LSF VTT D R+V SYNVAPA W+FG+T++G QF
Sbjct:  136 FDLSQPAFLRIARFQSGIVPVSYRRVACRRKGGMRFTINGHSYFNLVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNWQSGALLDGQALSFTVTTGDRRSVVSYNVAPAGWAFGQTFTGRQF 263          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 2.858e-47
Identity = 85/126 (67.46%), Postives = 103/126 (81.75%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 379
            FDL+ P+F  I  YRAG+VPV+Y+RVPC + GGIRFT+NG  YFNLVL+TNV GAGD++ VS+KGS+T W  MSRNWGQNWQSN  L GQSLSF+VT SD R+ TS+NVAPA+W FG+T+SG  FR
Sbjct:  136 FDLAMPMFLKIGLYRAGIVPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRMSRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATWQFGQTFSGKNFR 261          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXPA6_ORYSJ (Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXPA6 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 4.876e-47
Identity = 81/131 (61.83%), Postives = 108/131 (82.44%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG------WQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQF 376
            FDL++P F  IA++ AG+VPV+++RV C R+GG+RFT+NGH+YFNLVL+TNVGGAGDV ++++KGS +G      WQPMSRNWGQNWQSN YL+G++LSF+VT  DGR++T  +VAPA W FG+T+ G QF
Sbjct:  129 FDLAEPAFLRIARHAAGIVPVSFRRVACARKGGVRFTVNGHAYFNLVLVTNVGGAGDVRSLAVKGSGSGSRVGGRWQPMSRNWGQNWQSNAYLDGKALSFRVTAGDGRSLTCADVAPAGWQFGQTFEGRQF 259          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 3.160e-46
Identity = 81/126 (64.29%), Postives = 104/126 (82.54%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSGAQFR 379
            FDL+ P+F  IA+YRAG+VPV+++RVPC +RGGIRFTING  YFNLVL+TNV GAG++  + +KG+ T W  MSRNWGQNWQSN+ L GQSLSF+VT+SD R+ TS+N+APA+W FG+T+ G  FR
Sbjct:  131 FDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRGGIRFTINGFRYFNLVLVTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWNIAPANWKFGQTFMGKNFR 256          
The following BLAST results are available for this feature:
BLAST of DN620945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXP11_ORYSJ6.153e-5072.00Expansin-A11 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA5_ORYSJ2.338e-4969.84Expansin-A5 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ARATH3.054e-4969.84Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXPA7_ORYSJ3.988e-4968.25Expansin-A7 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP16_ARATH5.759e-4866.67Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA9_ARATH9.824e-4867.46Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXP21_ORYSJ1.283e-4766.41Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA3_ARATH2.858e-4767.46Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA6_ORYSJ4.876e-4761.83Expansin-A6 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA6_ARATH3.160e-4664.29Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06A12_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620945 ID=DN620945; Name=DN620945; organism=Citrus sinensis; type=EST; length=570bp
TTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATACAGAGCTG
GAGTTGTCCCTGTAGCTTACAAGAGGGTACCCTGCGGAAGAAGGGGAGGC
ATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTTGATCAC
CAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGGTCTA
GAACTGGCTGGCAGCCCATGTCAAGAAACTGGGGCCAAAACTGGCAAAGC
AACACTTATCTCAATGGCCAAAGCCTGTCATTTAAGGTCACCACAAGCGA
TGGCCGCACTGTGACTTCCTACAATGTTGCCCCTGCTAGCTGGTCCTTTG
GCCGAACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCATTAG
AGATTGGGTTTTAACACCTTTTTTAGCTAAATATTCGTGTACTAAGTAGT
ATATTTTAGTATGAAATTTTAGCATACTAGGGTATATATATATATATATA
ATATAGAAGTAGCTATGTGGCTAGTTTTTGGCTTCCAGGGTCAAAAATGA
AAAAAAGGGGCTTATTTTAA
back to top