DN620945

Overview
NameDN620945
Unique NameDN620945
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length570
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 5.591e-35
Identity = 64/121 (52.89%), Postives = 90/121 (74.38%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYS 364
            FD+SQP +++I  Y AG+VP+ Y++V C R GG+RF ING +YF LVL+TN+ G+G + ++S+KGS TGW  M+RNWG NWQ    L GQ+LSF VT++ G+T+   +  PA WSFG+T+S
Sbjct:  113 FDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 233          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 4.733e-34
Identity = 68/122 (55.74%), Postives = 86/122 (70.49%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYSG 367
            FDLS P+F  IAQ +A +VPV Y+RVPC + GG++F + G+     +L  NVGGAGD+ AVS KGS+T W  MSR WGQNW +N  L GQS+S +VTTSDG T    +V PASW FG+T+ G
Sbjct:  137 FDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASWGFGQTFDG 258          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP15_ORYSJ (Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 1.377e-33
Identity = 61/121 (50.41%), Postives = 90/121 (74.38%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYS 364
            FD+++P +  I  Y+AG+VPV Y+RVPC ++GG+RFT+ G +YF LVLI+NV G+G + +V +KG  T   P+SRNWG NWQS+  L GQ+L+F VT++ G+T+   N+ PA W FG+++S
Sbjct:  133 FDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLISNVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIVPAWWKFGQSFS 253          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP12_ARATH (Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.007e-33
Identity = 70/129 (54.26%), Postives = 91/129 (70.54%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQY-RAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSR-TGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTYS--GAQF 376
            FD+S P F  IA+    G+VPV Y+RV C RRGG+RFT+ G   FN+V+I+NVGG G V +V+++GS+   W  M+RNWG NWQS+  L GQ LSFKVT +D +T T  NV P+SW FG+T+S  G QF
Sbjct:  123 FDMSSPAFFRIARRGNEGIVPVFYRRVGCKRRGGVRFTMRGQGNFNMVMISNVGGGGSVRSVAVRGSKGKTWLQMTRNWGANWQSSGDLRGQRLSFKVTLTDSKTQTFLNVVPSSWWFGQTFSSRGRQF 251          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.233e-33
Identity = 64/121 (52.89%), Postives = 90/121 (74.38%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGR-TVTSYNVAPASWSFGRTY 361
            FDL++P F  IA ++AG++PV+Y+RV C + GGIRF   G+ Y+ LV + NVGG GD+  +++KGSRTGW  MS NWG ++Q+ + L GQSLSF++T+   R T+ +YN APASWS G+TY
Sbjct:  130 FDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKTY 250          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.872e-31
Identity = 59/121 (48.76%), Postives = 87/121 (71.90%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGS-RTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSFGRTY 361
            FDL+ P F  IA+ + GVVPV+Y++V C R+GGI++TI G+  +N+V++ NVGGAGDV  +++KG+ R  W P+ R+WGQ W++   L G+SL+F+V T D R  TS+ VAP  W++  TY
Sbjct:  164 FDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNTY 284          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP24_ARATH (Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 3.750e-31
Identity = 63/123 (51.22%), Postives = 85/123 (69.11%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTTSDGRTVTSYNVAPASWSF-GRTYSG 367
            FDLSQP+F  IA+Y+AGVVPV ++RVPC + GG++F I G+ +F ++L  NVGGAG V A+ IKG+RT W  M +NWGQ W +   L GQ LSF++TTSDG      +V P  W   G+++ G
Sbjct:  186 FDLSQPMFLKIAKYKAGVVPVKFRRVPCAKIGGVKFEIKGNPHFLMILPYNVGGAGAVRAMQIKGTRTQWIAMKKNWGQIWSTGVVLTGQCLSFRLTTSDGVMKEFIDVTPPDWKCNGQSFDG 308          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.147e-30
Identity = 63/122 (51.64%), Postives = 84/122 (68.85%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIK-GSRTGWQPMSRNWGQNWQSNTYLNGQSLSFKVTT-SDGRTVTSYNVAPASWSFGRTY 361
            FDLS+P F  +A +RAG+VPV Y+RVPC R GG+RF + G+ Y+ L  + NV GAGDV  + +K G   GW  MS NWG ++Q+   L GQ+LSFKVT+ + G+T+ +  V PASW FG TY
Sbjct:  138 FDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASWCFGLTY 259          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 3.293e-19
Identity = 52/128 (40.62%), Postives = 75/128 (58.59%), Query Frame = 2
Query:    2 FDLSQPVFQHIAQYRAGVVPVAYKRVPCGRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTG--WQPMSRNWGQNWQSNTYL-NGQSLSFKVTT--SDGRTVTSYNVAPASWSFGRTYSGA 370
            FD++ P F  +AQ  AG+VPV Y+RVPC R GG+RF + G+ Y+ L+ + NVGGAGDV ++S+K S  G  W   + NWG  +Q    L N   L+ K+TT  +  +T+   +     W  G  Y G+
Sbjct:  153 FDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYSTPQQTIIVSDAISPWWITGLCYQGS 280          
BLAST of DN620945 vs. ExPASy Swiss-Prot
Match: EXB11_ORYSJ (Expansin-B11 OS=Oryza sativa subsp. japonica GN=EXPB11 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.857e-13
Identity = 42/112 (37.50%), Postives = 65/112 (58.04%), Query Frame = 2
Query:   47 AGVVPVAYKRVPCGRRG-GIRFTIN--GHSYFNLVLITNVGGAGDVHAVSIKGSRTGWQPMSRNWGQNWQSNTYLNGQSL----SFKVTTSDGRTVTSYNVAPASWSFGRTY 361
            AG++ V Y+RVPC   G  I F ++   + ++  VLI    G GD++AV +  +  GW PM +NWG  W+ N+   G++L    S ++T+  G+ + + NV PASW  G TY
Sbjct:  175 AGILQVQYRRVPCKYSGVNIAFRVDQGANPFYFEVLIEFEDGDGDLNAVDLMEAGCGWTPMVQNWGALWRYNSN-TGKALKAPFSLRLTSDSGKVLVANNVIPASWKPGVTY 285          
The following BLAST results are available for this feature:
BLAST of DN620945 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXP20_ORYSJ5.591e-3552.89Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP21_ARATH4.733e-3455.74Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP15_ORYSJ1.377e-3350.41Expansin-A15 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP12_ARATH4.007e-3354.26Expansin-A12 OS=Arabidopsis thaliana GN=EXPA12 PE=... [more]
EXP18_ARATH5.233e-3352.89Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP26_ORYSJ2.872e-3148.76Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP24_ARATH3.750e-3151.22Expansin-A24 OS=Arabidopsis thaliana GN=EXPA24 PE=... [more]
EXP30_ORYSJ4.147e-3051.64Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP17_ORYSJ3.293e-1940.63Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB11_ORYSJ7.857e-1337.50Expansin-B11 OS=Oryza sativa subsp. japonica GN=EX... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_06A12_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620945 ID=DN620945; Name=DN620945; organism=Citrus sinensis; type=EST; length=570bp
TTTTGATCTCTCTCAGCCTGTGTTCCAACACATTGCTCAATACAGAGCTG
GAGTTGTCCCTGTAGCTTACAAGAGGGTACCCTGCGGAAGAAGGGGAGGC
ATCAGGTTCACAATCAATGGCCATTCCTACTTCAACCTAGTGTTGATCAC
CAACGTTGGTGGTGCTGGTGATGTTCATGCTGTTTCAATCAAAGGGTCTA
GAACTGGCTGGCAGCCCATGTCAAGAAACTGGGGCCAAAACTGGCAAAGC
AACACTTATCTCAATGGCCAAAGCCTGTCATTTAAGGTCACCACAAGCGA
TGGCCGCACTGTGACTTCCTACAATGTTGCCCCTGCTAGCTGGTCCTTTG
GCCGAACTTACTCCGGTGCTCAATTCCGCTAGAGCCACCAAGACCATTAG
AGATTGGGTTTTAACACCTTTTTTAGCTAAATATTCGTGTACTAAGTAGT
ATATTTTAGTATGAAATTTTAGCATACTAGGGTATATATATATATATATA
ATATAGAAGTAGCTATGTGGCTAGTTTTTGGCTTCCAGGGTCAAAAATGA
AAAAAAGGGGCTTATTTTAA
back to top