DN620933

Overview
NameDN620933
Unique NameDN620933
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_XENLA (40S ribosomal protein S8 OS=Xenopus laevis GN=rps8 PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 7.303e-35
Identity = 81/176 (46.02%), Postives = 103/176 (58.52%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXDAPATEE---AKKSSHVLRKLEKRQKDRTLDPHIE 569
            MGISRD+ H                 YE GR  ANTK+   + +  +RVRGGN K+RALRLD GN+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ I+ VD+ PF+QW+  HY + +GR                   P  EE    K+S    +K E+R+K   + P +E
Sbjct:    1 MGISRDNWHKRRKTGGKRKPYHKKRKYEPGRPAANTKIGPRR-IHTVRVRGGNKKYRALRLDAGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCILLVDSTPFRQWFEAHYALPLGRKKGAKL------------TPEEEEILNKKRSKKTQKKYEERKKTAKISPLLE 163          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8A_SCHPO (40S ribosomal protein S8-A OS=Schizosaccharomyces pombe GN=rps8a PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 7.303e-35
Identity = 82/173 (47.40%), Postives = 103/173 (59.54%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIE 569
            MGI+RDS H                 +ELGRQP+NT++   K +  +RVRGGN K+RALRLD+GN+SWGSE V++KTRI+ V Y+ SNNELVRT TL KSAIVQ+DAAPF+ WY  HYG+ +G                   A +T    KS HV RK   R  D  +D  +E
Sbjct:    1 MGITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGP-KRIHEVRVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG--------------SKGKKATSTPN-PKSKHVQRKHSARLGDSKVDSALE 157          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_DROME (40S ribosomal protein S8 OS=Drosophila melanogaster GN=RpS8 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 9.537e-35
Identity = 82/173 (47.40%), Postives = 103/173 (59.54%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXDAPATEEAKKSSHVLRKLEKRQKDRTLDPHIE 569
            MGISRDS H                 +ELGR  ANTKL S + V ++R RGGN K RALRL+TGN++W SE V RKTRI DVVYNASNNELVRT+TLVK++IV +DA PF+QWY  HY + +GR                 D       K+S  V++K  +RQK   ++  +E
Sbjct:    1 MGISRDSAHKRRATGGKRKSLRKKRKFELGRPAANTKLGSGR-VHKVRTRGGNTKLRALRLETGNFAWASEGVARKTRIADVVYNASNNELVRTKTLVKNSIVVIDATPFRQWYEAHYVLPLGR-------KRNPKHAQKEDENDVLTKKRSEKVMKKYLERQKYGKVEQALE 165          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_YEAST (40S ribosomal protein S8 OS=Saccharomyces cerevisiae GN=RPS8A PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 1.377e-33
Identity = 68/124 (54.84%), Postives = 87/124 (70.16%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGR 422
            MGISRDS H                 +ELGRQPANTK+ + K +  +R RGGN K+RALR++TGN+SW SE +++KTRI  VVY+ SNNELVRT TL K+AIVQ+DA PF+QW+  HYG  +G+
Sbjct:    1 MGISRDSRHKRSATGAKRAQFRKKRKFELGRQPANTKIGA-KRIHSVRTRGGNKKYRALRIETGNFSWASEGISKKTRIAGVVYHPSNNELVRTNTLTKAAIVQIDATPFRQWFEAHYGQTLGK 123          
BLAST of DN620933 vs. ExPASy Swiss-Prot
Match: RS8_LEIMA (40S ribosomal protein S8 OS=Leishmania major GN=RPS8 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 7.557e-32
Identity = 67/122 (54.92%), Postives = 85/122 (69.67%), Query Frame = 3
Query:   51 MGISRDSMHXXXXXXXXXXXXXXXXXYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDI 416
            MGI R  +H                  ELGR PANT+L + + V  +R RGGN K RALRLDTGN++W SEA+  + R+LDVVYNA++NELVRT+TLVK+ IV VDAAPFK+WY +HYG+D+
Sbjct:    1 MGIVRSRLHKRKITGGKTKIHRKRMKAELGRLPANTRLGARR-VSPVRARGGNFKIRALRLDTGNFAWASEAIAHRVRLLDVVYNATSNELVRTKTLVKNCIVAVDAAPFKRWYAKHYGIDL 121          
The following BLAST results are available for this feature:
BLAST of DN620933 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_XENLA7.303e-3546.0240S ribosomal protein S8 OS=Xenopus laevis GN=rps8... [more]
RS8A_SCHPO7.303e-3547.4040S ribosomal protein S8-A OS=Schizosaccharomyces ... [more]
RS8_DROME9.537e-3547.4040S ribosomal protein S8 OS=Drosophila melanogaste... [more]
RS8_YEAST1.377e-3354.8440S ribosomal protein S8 OS=Saccharomyces cerevisi... [more]
RS8_LEIMA7.557e-3254.9240S ribosomal protein S8 OS=Leishmania major GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_06A06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0006A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN620933 ID=DN620933; Name=DN620933; organism=Citrus sinensis; type=EST; length=571bp
CTATCAATCGCCCACGGACAGAGAAACCCTAAGAATTTCTCTCTGCGAAA
ATGGGTATTTCCCGTGATTCCATGCACAAGAGGCGTGCTACTGGGGGCAA
GAAGAAGGCTTGGAGGAAGAAGAGAAAGTATGAGCTTGGAAGGCAACCTG
CAAATACTAAGCTATCAAGCAACAAGACAGTGAGGAGGATTAGGGTTCGT
GGAGGTAATGTGAAATGGCGTGCTTTGAGGCTTGACACAGGAAACTACTC
CTGGGGAAGCGAAGCAGTGACTCGTAAGACCAGAATTCTGGATGTGGTAT
ACAATGCCTCCAATAATGAGCTGGTCCGTACTCAAACTTTGGTGAAGAGT
GCCATTGTTCAGGTTGATGCAGCACCATTCAAGCAGTGGTATCTCCAGCA
TTATGGTGTTGACATTGGTCGCAAGAAGAAGGCTGCAGCTGCTGCCACAA
CCGAGAAAGAAGGAGAGGAAGGAGACGCTCCTGCCACTGAGGAGGCAAAG
AAGAGCAGCCATGTCTTGAGAAAGCTTGAGAAGCGTCAAAAAGATCGCAC
ACTTGACCCACATATTGAGGA
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