FC922050

Overview
NameFC922050
Unique NameFC922050
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: GBLP_SOYBN (Guanine nucleotide-binding protein subunit beta-like protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.567e-11
Identity = 47/166 (28.31%), Postives = 75/166 (45.18%), Query Frame = 1
Query:    4 VVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGE 501
            VVL  +    +SG  +G +R+WDL A + +   V      V S+    D   +V+A+   T  +W  + G    T    +    AH+ ++     SP   +P   + +AS D TVK+WN+    L  TL GH  +V     S DG+   +   D    LW ++ G+
Sbjct:   69 VVLSSDGQFALSGSWDGELRLWDLAAGTSARRFVGHTKD-VLSVAFSIDNRQIVSASRDRTIKLWNTL-GECKYT----IQDGDAHSDWVSCVRFSPSTLQPT--IVSASWDRTVKVWNLTNCKLRNTLAGHNGYVNTVAVSPDGSLCASGGKDGVILLWDLAEGK 226          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: WDR69_DANRE (WD repeat-containing protein 69 OS=Danio rerio GN=wdr69 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 42/137 (30.66%), Postives = 67/137 (48.91%), Query Frame = 1
Query:  145 WDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATICCALH 555
            WD SL+  A+   +C VW    G       + L  L  HN  +L       F    + +ATAS+D T ++++ D F     L GH+  +    F+  G+ ++TAS D T+R+W + TG  ++V +GH      CA +
Sbjct:  271 WDCSLIATASLDKSCKVWDAEGG-------QCLATLLGHNDEVLDVC----FNYTGQLIATASADGTSRVFSTDTFQCLCQLEGHKGEISKVCFNAQGSRVLTASVDKTSRVWCVKTGACLQVLEGHSDEIFSCAFN 396          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: UTP13_SCHPO (Probable U3 small nucleolar RNA-associated protein 13 OS=Schizosaccharomyces pombe GN=utp13 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 42/157 (26.75%), Postives = 72/157 (45.86%), Query Frame = 1
Query:   55 NIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDIRVYQGH 525
            N  VW + A+          D  V ++ V  DG ++ +A+   T  +W    G       E +  L+ H   +  C  +P      R LA+ S D T++IWNVD     +TL GH   +   ++   G  +++A++D   ++WS+S+GE +     H
Sbjct:  455 NRAVWTIKAH----------DRDVNAIQVSKDGRIIASASQDKTIKLWDSSTG-------EVVGVLRGHRRGVWACSFNPF----SRQLASGSGDRTIRIWNVDTQQCVQTLEGHTGAILKLIYISQGTQVVSAAADGLVKVWSLSSGECVATLDNH 590          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: TUP1_KLULA (General transcriptional corepressor TUP1 OS=Kluyveromyces lactis GN=TUP1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 46/190 (24.21%), Postives = 84/190 (44.21%), Query Frame = 1
Query:   16 PNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVM-WDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEK-------TLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATICCALHDG 561
            P+  +L+SG  +  +R+WDLT  +CS  L   ++  V ++ V   +G  + A +   T  VW     + T    E L             + S  F    + + + S D +VK+WN++G + +K       T  GH+ +V     + +  Y+++ S D     W   +G  + + QGH  + I   + +G
Sbjct:  458 PSGNKLVSGSGDRTVRIWDLTTGTCSLTL--SIEDGVTTVAVSPGEGKFIAAGSLDRTVRVW----DSDTGFLVERLDSENELGTGHRDSVYSVVFTRDGKGVVSGSLDRSVKLWNLNGLSGQKSHAECEVTYTGHKDFVLSVATTQNDEYILSGSKDRGVLFWDTKSGNPLLMLQGHRNSVISVTVANG 641          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: TG125_CAEBR (WD repeat-containing protein tag-125 OS=Caenorhabditis briggsae GN=tag-125 PE=4 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 31/90 (34.44%), Postives = 52/90 (57.78%), Query Frame = 1
Query:  277 KCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATICC 546
            K + + +F    ++L T+S+D TVKIWN+   + E+TL GH+  V D  +S D   ++TAS D T +++ + T +  +  +GH     CC
Sbjct:   80 KSISAVKFSPCGKFLGTSSADKTVKIWNMSDLSCERTLTGHKLGVNDFAWSADSKSIVTASDDKTLKIYEVPTVKMAKTLKGHTNYVFCC 169          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: LIS1_RAT (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Rattus norvegicus GN=Pafah1b1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 43/180 (23.89%), Postives = 77/180 (42.78%), Query Frame = 1
Query:    4 VVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATIC 543
            V+ HP  + ++S  ++  I+VWD         L    D +V+ ++    G L+ + +   T  +W           FE +  +  H+  +    + P       ++ +AS D T+K+W V      KT  GH+ WV     + DG  + + S+D T R+W ++T E     + H     C
Sbjct:  114 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD-SVQDISFDHSGKLLASCSADMTIKLW-------DFQGFECIRTMHGHDHNVSSVAIMPN----GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVEC 281          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: LIS1_PANTR (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pan troglodytes GN=PAFAH1B1 PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 43/180 (23.89%), Postives = 77/180 (42.78%), Query Frame = 1
Query:    4 VVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATIC 543
            V+ HP  + ++S  ++  I+VWD         L    D +V+ ++    G L+ + +   T  +W           FE +  +  H+  +    + P       ++ +AS D T+K+W V      KT  GH+ WV     + DG  + + S+D T R+W ++T E     + H     C
Sbjct:  114 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD-SVQDISFDHSGKLLASCSADMTIKLW-------DFQGFECIRTMHGHDHNVSSVAIMPN----GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVEC 281          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: LIS1_MOUSE (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Mus musculus GN=Pafah1b1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 43/180 (23.89%), Postives = 77/180 (42.78%), Query Frame = 1
Query:    4 VVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATIC 543
            V+ HP  + ++S  ++  I+VWD         L    D +V+ ++    G L+ + +   T  +W           FE +  +  H+  +    + P       ++ +AS D T+K+W V      KT  GH+ WV     + DG  + + S+D T R+W ++T E     + H     C
Sbjct:  114 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD-SVQDISFDHSGKLLASCSADMTIKLW-------DFQGFECIRTMHGHDHNVSSVAIMPN----GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVEC 281          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: LIS1_HUMAN (Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo sapiens GN=PAFAH1B1 PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 43/180 (23.89%), Postives = 77/180 (42.78%), Query Frame = 1
Query:    4 VVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQAHNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATIC 543
            V+ HP  + ++S  ++  I+VWD         L    D +V+ ++    G L+ + +   T  +W           FE +  +  H+  +    + P       ++ +AS D T+K+W V      KT  GH+ WV     + DG  + + S+D T R+W ++T E     + H     C
Sbjct:  114 VIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD-SVQDISFDHSGKLLASCSADMTIKLW-------DFQGFECIRTMHGHDHNVSSVAIMPN----GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVEC 281          
BLAST of FC922050 vs. ExPASy Swiss-Prot
Match: LIS1_CAEEL (Lissencephaly-1 homolog OS=Caenorhabditis elegans GN=lis-1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.883e-11
Identity = 46/190 (24.21%), Postives = 79/190 (41.58%), Query Frame = 1
Query:    1 TVVLHPNQTELISGDQNGNIRVWDLTANSCSCELVPEVDTAVRSLTVMWDGSLVVAANNHGTCYVWRLMRGTQTMTNFEPLHKLQA-----HNGYILKCLLSPEFCEPHRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDATARLWSMSTGEDIRVYQGHHKATICCALH 555
            +V   P    ++S  ++  I+ WD++   C        D  VR + +  DG+L  +A+   T  VW     +  +   +  H ++         Y       PE    H  L + S D ++K WN++   +  TL+ H+ WV    F   G YLI+ + D T R+W +S    ++  + H       A H
Sbjct:  196 SVTFLPTGDFVLSASRDHTIKQWDISTGYCVYTFRGHNDW-VRMIRISNDGTLFASASLDQTVTVWSFATKSAKLVLRDHEHAVECVEWAPDTAYTNVTGQQPEGNSTH-ILFSGSRDRSIKAWNINTGDVLFTLLAHENWVRGLAFHPKGKYLISVADDKTLRVWELSAQRCMKAIEAHEHFVSTVAFH 383          
The following BLAST results are available for this feature:
BLAST of FC922050 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
GBLP_SOYBN7.567e-1128.31Guanine nucleotide-binding protein subunit beta-li... [more]
WDR69_DANRE9.883e-1130.66WD repeat-containing protein 69 OS=Danio rerio GN=... [more]
UTP13_SCHPO9.883e-1126.75Probable U3 small nucleolar RNA-associated protein... [more]
TUP1_KLULA9.883e-1124.21General transcriptional corepressor TUP1 OS=Kluyve... [more]
TG125_CAEBR9.883e-1134.44WD repeat-containing protein tag-125 OS=Caenorhabd... [more]
LIS1_RAT9.883e-1123.89Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_PANTR9.883e-1123.89Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_MOUSE9.883e-1123.89Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_HUMAN9.883e-1123.89Platelet-activating factor acetylhydrolase IB subu... [more]
LIS1_CAEEL9.883e-1124.21Lissencephaly-1 homolog OS=Caenorhabditis elegans ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM1DA01RM1 SLH Citrus sinensis cDNA clone KN0AAM1DA01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922050 ID=FC922050; Name=FC922050; organism=Citrus sinensis; type=EST; length=765bp
ACTGTTGTATTGCACCCAAATCAGACTGAACTGATATCTGGCGACCAAAA
TGGGAATATTCGTGTGTGGGATTTGACAGCAAATTCTTGCAGTTGTGAAC
TGGTGCCAGAGGTAGATACAGCTGTTAGGTCTTTAACAGTTATGTGGGAC
GGAAGCCTGGTAGTTGCTGCTAATAACCATGGAACATGTTATGTTTGGCG
CTTGATGCGTGGGACTCAGACTATGACCAACTTTGAGCCACTTCATAAAC
TACAAGCACATAATGGATACATCCTGAAATGTCTCCTTTCTCCAGAGTTT
TGTGAACCCCACAGATATCTGGCCACTGCATCTTCTGACCACACTGTCAA
GATTTGGAATGTTGATGGTTTCACATTAGAAAAAACCTTGATAGGACATC
AACGATGGGTATGGGACTGTGTTTTCTCTGTAGATGGTGCCTATCTCATA
ACAGCCTCTTCTGATGCGACAGCAAGACTATGGTCTATGTCAACCGGTGA
AGACATCAGAGTGTATCAAGGACACCACAAAGCAACCATTTGTTGTGCTC
TCCATGACGGAGCTGAACCCTCTGCCTCTTGAACCTANAATCTGACATCA
GCTTGGATCAAGGGCACCACCATGCAAACATTTATCATCCTCTCCCTGAT
GCAGCTGAATCTGTACGACTTGAACCTAGATTCTGTTTTGGCTCTCTGGT
GATTGTGAGTGCATAATAACAACAGCTTGGATCAAGGGCACCACCATGCA
AACATTTATCATCCT
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