FC922038

Overview
NameFC922038
Unique NameFC922038
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length343
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2672 contig Csv1_Contig2672:429..770. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_MOUSE (Adenine phosphoribosyltransferase OS=Mus musculus GN=Aprt PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.948e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 180
            + G+R +IVDDL+ATGGT+ AA  LL ++   VVEC  ++EL  LKGRERLG  P F L+
Sbjct:  118 EPGQRVVIVDDLLATGGTMFAACDLLHQLRAEVVECVSLVELTSLKGRERLGPIPFFSLL 177          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_LACLM (Adenine phosphoribosyltransferase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=apt PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.948e-11
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    7 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 180
            G+R LIVDDL+ATGGT++A I L+E++G  VV CA +IEL ELKGRE++G     VL+
Sbjct:  111 GQRVLIVDDLLATGGTIAATIELVEKMGGVVVGCAFLIELDELKGREKIGNYDYKVLM 168          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_CHLAA (Adenine phosphoribosyltransferase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=apt PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.948e-11
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 180
            Q G R L++DDL+ATGGT++AA  L+E  G  V E A VIEL  L GRERL E+P+F L+
Sbjct:  112 QPGARVLVIDDLLATGGTIAAACDLIEMAGGQVAELAFVIELTFLNGRERLRERPVFSLI 171          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_METPP (Adenine phosphoribosyltransferase OS=Methylibium petroleiphilum (strain PM1) GN=apt PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.545e-11
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL--GEKPLFVLVS 183
            +AG+R L++DDL+ATGGT+ A  RLLER+G  V+E A +++LPEL G  +L     PLF LVS
Sbjct:  130 KAGDRVLLIDDLIATGGTMMAGKRLLERLGATVIEGAAIVDLPELGGAAKLRAAGLPLFTLVS 192          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_LACLS (Adenine phosphoribosyltransferase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=apt PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.545e-11
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 1
Query:    7 GERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 180
            G+R LIVDDL+ATGGT++A I L+E++G  VV CA +IEL ELKGRE++G     VL+
Sbjct:  111 GQRVLIVDDLLATGGTIAATIELVEKMGGVVVGCAFLIELDELKGREKIGNYVYKVLM 168          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_RHOSK (Adenine phosphoribosyltransferase OS=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) GN=apt PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.323e-11
Identity = 31/51 (60.78%), Postives = 42/51 (82.35%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 153
            QAGE+ L+VDDL+ATGGT  A I+L+E++G  VV CA V++LP+L GR+RL
Sbjct:  112 QAGEKVLLVDDLLATGGTAEAGIKLIEQLGGQVVGCAFVVDLPDLGGRKRL 162          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_RHOS4 (Adenine phosphoribosyltransferase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=apt PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.323e-11
Identity = 31/51 (60.78%), Postives = 42/51 (82.35%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 153
            QAGE+ L+VDDL+ATGGT  A I+L+E++G  VV CA V++LP+L GR+RL
Sbjct:  112 QAGEKVLLVDDLLATGGTAEAGIKLIEQLGGQVVGCAFVVDLPDLGGRKRL 162          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_RAT (Adenine phosphoribosyltransferase OS=Rattus norvegicus GN=Aprt PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.323e-11
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGEKPLFVLV 180
            + G++ +IVDDL+ATGGT+ AA  LL ++   VVEC  ++EL  LKGRE+LG  P F L+
Sbjct:  118 EPGQKVVIVDDLLATGGTMCAACELLSQLRAEVVECVSLVELTSLKGREKLGPVPFFSLL 177          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_BORPD (Adenine phosphoribosyltransferase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=apt PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.323e-11
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERLGE--KPLFVLVS 183
            + G+R L+VDDL+ATGGT+ AAI+LL+R+G +VVE A +I+LPEL G  ++     PLF + S
Sbjct:  115 RTGQRVLLVDDLIATGGTMLAAIKLLQRLGANVVEAAAIIDLPELGGSGKVAATGTPLFTVCS 177          
BLAST of FC922038 vs. ExPASy Swiss-Prot
Match: APT_RHOS1 (Adenine phosphoribosyltransferase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=apt PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.340e-11
Identity = 31/51 (60.78%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 QAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGRERL 153
            QAGE+ L+VDDL+ATGGT  A I+L+E++G  VV CA V++LP+L GR RL
Sbjct:  112 QAGEKVLLVDDLLATGGTAEAGIKLIEQLGDQVVGCAFVVDLPDLGGRRRL 162          
The following BLAST results are available for this feature:
BLAST of FC922038 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
APT_MOUSE1.948e-1155.00Adenine phosphoribosyltransferase OS=Mus musculus ... [more]
APT_LACLM1.948e-1158.62Adenine phosphoribosyltransferase OS=Lactococcus l... [more]
APT_CHLAA1.948e-1156.67Adenine phosphoribosyltransferase OS=Chloroflexus ... [more]
APT_METPP2.545e-1153.97Adenine phosphoribosyltransferase OS=Methylibium p... [more]
APT_LACLS2.545e-1158.62Adenine phosphoribosyltransferase OS=Lactococcus l... [more]
APT_RHOSK3.323e-1160.78Adenine phosphoribosyltransferase OS=Rhodobacter s... [more]
APT_RHOS43.323e-1160.78Adenine phosphoribosyltransferase OS=Rhodobacter s... [more]
APT_RAT3.323e-1151.67Adenine phosphoribosyltransferase OS=Rattus norveg... [more]
APT_BORPD3.323e-1152.38Adenine phosphoribosyltransferase OS=Bordetella pe... [more]
APT_RHOS14.340e-1160.78Adenine phosphoribosyltransferase OS=Rhodobacter s... [more]

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Properties
Property NameValue
Genbank descriptionC06056H01T7 RindPdigS Citrus sinensis cDNA clone C06056H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC922038 ID=FC922038; Name=FC922038; organism=Citrus sinensis; type=EST; length=343bp
CAAGCAGGGGAGCGTGCTTTAATAGTAGACGATCTAGTTGCAACTGGTGG
GACCTTGTCTGCTGCAATCAGGCTACTTGAGCGAGTTGGGGTGCATGTGG
TTGAGTGTGCATGCGTGATTGAACTGCCAGAGCTAAAGGGTCGGGAACGG
CTGGGAGAGAAACCACTATTTGTTCTTGTAAGCTAAACTTGATCTCAGTT
TATGGTTTAAATGCAATGTTTGTGGACCATATGGGTTTCTAGTCGCTCGG
GCTCTGCTCAAAGCTTGAGAACTTCATAAAACCATCTGATTAATATAAGA
GCAGTTTCATTGGCTTTTTAAAAAAAAAAAAAAAAAAAAAAAA
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