EY701055 | Citrus Genome Database

Overview


Name	EY701055
Unique Name	EY701055
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	957

Libraries


Library Name	Type
Sweet orange fruit, development stadium (1 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A_AERPE (Elongation factor 1-alpha OS=Aeropyrum pernix GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.277e-37
Identity = 53/91 (58.24%), Postives = 70/91 (76.92%), Query Frame = 1

Query:  142 ENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            E  H+N+VVIGHVD GKST  GHL+Y+LG I+++ ++  E++A    K SFK+AW+LDK+K ERERGITID+   KFET +Y  T+IDAPG
Sbjct:    3 EKPHMNLVVIGHVDHGKSTLVGHLLYRLGYIEEKKLKELEEQAKSRGKESFKFAWILDKMKEERERGITIDLTFMKFETKKYVFTIIDAPG 93

HSP 2 Score: 57.7658 bits (138), Expect = 2.277e-37
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAGSDSWTMLVA 553
            GHRDF+KNMITG SQAD A+L++ +  G FEAG+S  G     +L+A
Sbjct:   93 GHRDFVKNMITGASQADAAILVVSARKGEFEAGMSTEGQTREHLLLA 139

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.967e-37
Identity = 50/91 (54.95%), Postives = 73/91 (80.22%), Query Frame = 1

Query:  142 ENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            +  H+NIV+IGHVD GKST TGH++Y+LG  D++ ++  E+E+ +M K SFK+AW+LD++K ERERG+TI ++  KFET +Y+ T+IDAPG
Sbjct:    5 QKPHLNIVIIGHVDHGKSTMTGHILYRLGYFDEKTVKMIEEESKKMGKESFKFAWLLDRMKEERERGVTISLSYMKFETKKYFFTIIDAPG 95

HSP 2 Score: 56.225 bits (134), Expect = 2.967e-37
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAG 526
            GHRDF+KNMITG SQAD A+L++ +  G FEAG+S  G
Sbjct:   95 GHRDFVKNMITGASQADAAILVVSARKGEFEAGMSAEG 132

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A_GIALA (Elongation factor 1-alpha (Fragment) OS=Giardia lamblia GN=TEF1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.041e-37
Identity = 55/74 (74.32%), Postives = 62/74 (83.78%), Query Frame = 1

Query:  193 STTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            ST TGHLIYK GGID+R I+ +EK A EM K SFKYAWVLD+LK ERERGITI+IALWKFET +Y  T+IDAPG
Sbjct:    1 STLTGHLIYKCGGIDQRTIDEYEKRATEMGKGSFKYAWVLDQLKDERERGITINIALWKFETKKYIVTIIDAPG 74

HSP 2 Score: 58.9214 bits (141), Expect = 5.041e-37
Identity = 27/38 (71.05%), Postives = 32/38 (84.21%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAG 526
            GHRDFIKNMITGTSQAD A+L++ +  G FEAGIS+ G
Sbjct:   74 GHRDFIKNMITGTSQADVAILVVAAGQGEFEAGISKDG 111

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.450e-36
Identity = 54/94 (57.45%), Postives = 70/94 (74.47%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            M     H+N+VVIGHVD GKST  GH++Y+LG +D++ I+  E+EA +  K SFK+AW+LDKLK ERERG+TI +   KFET RY  T+IDAPG
Sbjct:    1 MSSGKPHLNLVVIGHVDHGKSTLVGHILYRLGLVDQKTIQMLEEEAKKRGKESFKFAWLLDKLKEERERGVTIALTYMKFETRRYIFTIIDAPG 94

HSP 2 Score: 55.0694 bits (131), Expect = 1.450e-36
Identity = 24/38 (63.16%), Postives = 30/38 (78.95%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAG 526
            GHRDF+KNMITG SQAD A+L++ +  G FEAG+S  G
Sbjct:   94 GHRDFVKNMITGASQADAALLVVSARKGEFEAGMSPEG 131

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A_ARCFU (Elongation factor 1-alpha OS=Archaeoglobus fulgidus GN=tuf PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.374e-33
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            M KE  HIN+  IGHVD GKST  G L+Y+ G I + +IE+  KEA E  K +F++AWV+D+LK ERERG+TID+A  KF+T +YY T++D PG
Sbjct:    1 MAKEKEHINVAFIGHVDHGKSTLIGRLLYETGEIPEHIIEKMRKEAQEKGKATFEFAWVMDRLKEERERGVTIDVAHRKFQTDKYYITIVDCPG 94

HSP 2 Score: 45.8246 bits (107), Expect = 2.374e-33
Identity = 20/24 (83.33%), Postives = 22/24 (91.67%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIID 484
            GHRDFIKNMITG SQAD AVL++D
Sbjct:   94 GHRDFIKNMITGASQADAAVLVMD 117

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.829e-33
Identity = 50/94 (53.19%), Postives = 70/94 (74.47%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            M  E  H+N+V+IGHVD GKST  G L+++ G I + +I+ ++KEA E  K +F++AWV+D+ K ERERG+TID+   KFET +YY T+IDAPG
Sbjct:    1 MASEKPHMNLVIIGHVDHGKSTLVGRLLFEHGEIPQHIIDEYKKEAEEKGKATFEFAWVMDRFKEERERGVTIDLTHRKFETDKYYFTIIDAPG 94

HSP 2 Score: 47.7506 bits (112), Expect = 6.829e-33
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTG 496
            GHRDF+KNMITGTSQAD AVL++ +  G
Sbjct:   94 GHRDFVKNMITGTSQADAAVLVVSAREG 121

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: HBS1L_PONAB (HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.836e-33
Identity = 48/87 (55.17%), Postives = 67/87 (77.01%), Query Frame = 1

Query:  154 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            +N+VVIGHVD+GKST  GH++Y LG I+KR + ++E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFETT    T++DAPG
Sbjct:  261 LNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPG 347

HSP 2 Score: 53.5286 bits (127), Expect = 8.836e-33
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAG 526
            GH+DFI NMITG +QAD AVL++D++ G FEAG    G
Sbjct:  347 GHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGG 384

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: HBS1L_HUMAN (HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.836e-33
Identity = 48/87 (55.17%), Postives = 67/87 (77.01%), Query Frame = 1

Query:  154 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            +N+VVIGHVD+GKST  GH++Y LG I+KR + ++E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFETT    T++DAPG
Sbjct:  261 LNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPG 347

HSP 2 Score: 53.5286 bits (127), Expect = 8.836e-33
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAG 526
            GH+DFI NMITG +QAD AVL++D++ G FEAG    G
Sbjct:  347 GHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGG 384

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: EF1A_METHJ (Elongation factor 1-alpha OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=tuf PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.894e-33
Identity = 53/94 (56.38%), Postives = 68/94 (72.34%), Query Frame = 1

Query:  133 MGKENTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            M  E  HIN+ VIGH+D GKSTT G L+Y+ G +   +IE+++KEA    K SF +AWV+D LK ERERGITIDIA  +F+T +YY TV+D PG
Sbjct:    1 MATEKPHINLAVIGHIDHGKSTTVGRLMYEAGAVPAHIIEQYKKEAESKGKGSFAFAWVMDNLKEERERGITIDIAHKRFDTDKYYFTVVDCPG 94

HSP 2 Score: 45.0542 bits (105), Expect = 8.894e-33
Identity = 19/31 (61.29%), Postives = 24/31 (77.42%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFE 505
            GHRDF+KNMITG SQAD AV+++ +  G  E
Sbjct:   94 GHRDFVKNMITGASQADAAVIVVAAPDGVME 124

[Close]

BLAST of EY701055 vs. ExPASy Swiss-Prot
Match: HBS1L_MOUSE (HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 1.151e-32
Identity = 47/87 (54.02%), Postives = 67/87 (77.01%), Query Frame = 1

Query:  154 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPG 414
            +N+VVIGHVD+GKST  GH++Y LG ++KR + ++E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFETT    T++DAPG
Sbjct:  259 LNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPG 345

HSP 2 Score: 53.5286 bits (127), Expect = 1.151e-32
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 2

Query:  413 GHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISRAG 526
            GH+DFI NMITG +QAD AVL++D++ G FEAG    G
Sbjct:  345 GHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGG 382

The following BLAST results are available for this feature:

BLAST of EY701055 vs. ExPASy Swiss-Prot

BLAST of EY701055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 279


Match Name	E-value	Identity	Description
EF1A_AERPE	2.277e-37	58.24	Elongation factor 1-alpha OS=Aeropyrum pernix GN=t...	[more]
EF1A_DESMO	2.967e-37	54.95	Elongation factor 1-alpha OS=Desulfurococcus mobil...	[more]
EF1A_GIALA	5.041e-37	74.32	Elongation factor 1-alpha (Fragment) OS=Giardia la...	[more]
EF1A_STAMF	1.450e-36	57.45	Elongation factor 1-alpha OS=Staphylothermus marin...	[more]
EF1A_ARCFU	2.374e-33	55.32	Elongation factor 1-alpha OS=Archaeoglobus fulgidu...	[more]
EF1A_PICTO	6.829e-33	53.19	Elongation factor 1-alpha OS=Picrophilus torridus ...	[more]
HBS1L_PONAB	8.836e-33	55.17	HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV...	[more]
HBS1L_HUMAN	8.836e-33	55.17	HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV...	[more]
EF1A_METHJ	8.894e-33	56.38	Elongation factor 1-alpha OS=Methanospirillum hung...	[more]
HBS1L_MOUSE	1.151e-32	54.02	HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-700-102-E02-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY701055 ID=EY701055; Name=EY701055; organism=Citrus sinensis; type=EST; length=957bp
TTGCGGCCGCGCCGGCCCCCCAACNTGTGTTCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGAACCATTTTCGCGAATAT
CATTTTAATAAGGTTTTTTCTACATTTGCATAATGGGTAAGGAGAACACT
CACATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCAC
CACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCG
AGAGGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATAC
GCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCAT
TGATATTGCCTTGTGGAAGTTCGAGACCACCAGGTACTACTGCACCGTCA
TTGATGCTCCTGGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCTACCACCGGTGGTT
TTGAAGCTGGTATCTCCCGGGCAGGGTCAGACTCCTGGACCATGCTCGTT
GCTTGGCTTCCACCCTTGGGTGTGGAAGCCAGACTGAGGTGGGCTGGCGG
GTACGGACGGATGGATTGCCGGGCGACCCCCCAAGGTACGCCACAGGCGG
TACGCGTCCGACGCAAAATTTCGTGAAAGGGAGCGTCCTCCTTTCCGTGC
CCTTGAAGGAACCGGCGTTGGAGTGCCCCCCCCCCGCAGCACATTTCTCC
CCTTCCGTGGCCCCCACCTCCCGCGGTTTGCAGGGCGTTACCAGCCTGCA
GTCGCTTAAGTGGCCCACCCGGCGTTCGGCCGGGGGTTAGGGGGGGGGCG
TGGGGGGGGGGGGGGGGGCCGCGCACGCCGCGCCGCCCCGCCCCGGAGGG
GGCGGGCCCGCCCGGCCCGCCGCGCGGGCTGGCCGGCCCCCCCCCCCAGC
GCCGGCC